Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0547 ATGGAAGGGTCTGATAGTGACCCGGATTCTCATAGAGCTGCTTCTACCAGTGGTAGTTCAAGGAGGTTTGGATTGTTGGCTGCCTCGAATATAATCCAGGCTCCGATTTCTGCACTTTTGGAGTATTCTGGTATTCTTCGTGGCCGCCCGAGTCATCAAGAATCCGAGGCGTTGATTAGCGCTCGACTGCCTTCGGGGTTCCGAAACCATCTTCGTAATCAGATTGACGAATCTTCTGGTGCCACCAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCGGAACATGGTAGGGATGGTGCTGGACTTGTAGTTGGACAAGCAAGGGAAGTCAGCAGTCAGAATGTGGTGTCTTCGCAATCTGTTTCGAGGTTGGCATCGTCGGAGCTTATCCAGGGCAATCCTGCTGCTGAACTTGGTGCAAGAGAGAGCATTCTTCAACCGATTAACACAGGTGGTGATGGAGATGCCTCGGAGGCAGCTGGAGGAAATAGCAGGGATTCTTCTTACCAAAGGTATGATATTCAGCAGGCTGCTCGTGGGATTGAGCAAATTCTCCCATTTAGCTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATTTGGATTGCTGCTTTCATGTATAAGTCAAATGATATTTTGCGAAGACAAACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTGGTTGCCATTTCTCTTGCATTCACCGCTCATGTTATTGGTGTGTACTGGTGGTATCGGAATGATGACCTCTTATATCCTTTGATTATGCTTCCTCCGAGAGCTATACCTCCTTTTTGGCATGCTATTTTCGTCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGGTCAAGTGTGCTCTTTTGATGTATTACAAGAACAGCAGGGGCCGCAATTATCGTAAACAGGGGCAAATGCTAACTTTAGTCGAATATCTGCTACTATTGTACCGTGCCTTGTTGCCTACTCCCATCTGGTATCGTTTCTTTTTGAACAAGGAGTATGGGAGTTTGTTTTCATCATTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTATCACGTAAAGAGGTGCATTATGGGGCATATGCAACATCAGAGCAGGTCAGTGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAAAAGATGCATGCGCCTATCCTGCTCCGATGTAAACACATATTTTGTGAAGATTGTGTTTCAGAGTGGTTCGAGCGGGAACGAACGTGTCCACTGTGTAGGGCCTTGGTTAAACCTGCGGATCTCAAGTCATTCAGCGATGGGTCGACAAGTCTGTTTTTTCAGGTTTTCTAA 1404 45.58 MEGSDSDPDSHRAASTSGSSRRFGLLAASNIIQAPISALLEYSGILRGRPSHQESEALISARLPSGFRNHLRNQIDESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSSQNVVSSQSVSRLASSELIQGNPAAELGARESILQPINTGGDGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRRQTALKGERKISVLVAISLAFTAHVIGVYWWYRNDDLLYPLIMLPPRAIPPFWHAIFVIMVNDTLVRQAVMVVKCALLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPIWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLKSFSDGSTSLFFQVF 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5503792 5512322 - Sed0008516.1 Sed14g0547 736265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0547 467 SMART ring_2 406 443 IPR001841 -
Sed14g0547 467 Pfam Ring finger domain 405 444 IPR001841 -
Sed14g0547 467 ProSitePatterns Zinc finger RING-type signature. 421 430 IPR017907 -
Sed14g0547 467 MobiDBLite consensus disorder prediction 151 171 - -
Sed14g0547 467 SUPERFAMILY RING/U-box 401 449 - -
Sed14g0547 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 454 IPR013083 -
Sed14g0547 467 CDD RING-HC_RNFT1-like 404 444 - -
Sed14g0547 467 ProSiteProfiles Zinc finger RING-type profile. 406 444 IPR001841 -
Sed14g0547 467 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 14 467 IPR044235 GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:1904294(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0314 Sed-Chr4:2381914 Sed14g0547 Sed-Chr14:5503792 1.50E-151 dispersed
Sed04g2974 Sed-Chr4:41131597 Sed14g0547 Sed-Chr14:5503792 7.00E-33 dispersed
Sed14g0547 Sed-Chr14:5503792 Sed14g0548 Sed-Chr14:5506060 6.40E-219 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0547 - - - 0.0