Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0562 ATGAGGCTTCAATCCCTTTTTACAGCATCATCTTTACTCGTACGCATATACTTTCTCTCCTTCATTGCGGCTGATCTGAACTCTGACAAGCAAGCTCTTCTCGAGTTTATTTCAACAGTTCCCCATGGTCGAAAAATTAACTGGGATTCTTCTACCCCTGTCTGCACTACATGGGTTGGCATCACATGCACTTCAGACCTTTCAAATGTGCTTGCTCTCAGGCTTCCGGCTGTCGGACTATACGGTCCAATCCCGTCCAATACACTTGGAAAGTTAGACGCGCTTAGAACTTTGAGTCTTCGGTCTAATAATCTTAATGGGAACATTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATTCCTTCTTCACTGTCTCCTAGCCTTACCTTTCTTGATCTGTCCTTGAACTCTCTCAATGGAAACATTCCGACATCGATTCAAAATTTAACACGTCTCACTAACATCAACCTCCAAAATAACTCCCTGACTGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTGAACTTGAGCTACAACCATCTTAGTGGTTCCATTCCTGCTTCTCTGCAATCATTTCCTCCTTCTTCCTTTGAAGGGAACTTACTGCTTTGTGGCTCTCCTCTGAAAAATTGCTCCCTTGATGTTGCCCCCTTACCATCTCTGTCTCCCCCTGGTTCGACCCCGCCAAAGAAAAAGAGTGAAAAGAGAGTAAATATCGGTGCGATCGTTGCCATTGCCCTAGGTGGTTTTGCAGTGCTCTTCCTCCTGGTGATAATGATTATTGTTTGCTGTATAAAGAAAAAAGATGGTGAAGGTAGTAGTACTGCTACTGCTGTAGCAAAAGGAAAGGGTAAAAGCGGTGAGCGACCGAGGGAGGATTTCGGAAGCGGGGTACAAGAGCCTGAGAAAAATAAGCTGGTTTTCTTTGAAGGAAGTTCTTACAATTTTGATCTTGAGGACTTGTTAAGGGCCTCGGCCGAAGTGCTCGGAAAAGGAAGTTATGGGACTACTTACAAGGCAATCTTAGAGGAAGGAACAACAGTGGTGGTGAAGAGGTTGAAAGAAGTGGTAGCTGGGAAAAAAGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGAGCAGCATCCAAACATCGTGCCTCTCCGAGCCTATTACTATTCAAAAGACGAGAAGCTCTTAGTTTATGATTACGCCATTGCTGGAAGCTTTTCGGCATTACTCCGTGGAAGTCGAGAAAGTGGACGAGCGCCTCCCGACTGGGAAATGAGAGTGAAGGTTTCACTGGGGAGTGCCAAAGGCCTCTCCCACATCCATTCAGCAAGTGGAGGAAAGCTCATCCATGGAAACATCAAGTCCTCTAACATTCTTCTCACACAAGACCTGAATGGTTGTGTTGCAGACTTTGGCCTGACTCCTTTAATGAACTCCCCTCCCATTCCCTCTAGAAGCACAGGATATCGAGCTCCCGAGGTGATCGAGACTCGGAAATCCACTCAAAAGTCTGATGTTTACAGTTTTGGAGTTGTTTTGCTCGAGATGTTGACTGGGAAGGCGCCAGCCCAGTCACCAAGCCGTGATGATGTAGCGGACCTTCCGAGATGGGTTCAGTCCGTGGTAAGAGAGGAATGGACATCAGAGGTGTTTGATGTAGAGCTAATGAAGTATGAGAACATTGAAGAAGAGTTGGTTCAAATGCTTCAAATAGCAATGGCATGCGTGTCTCAAGTGCCCGATATGAGACCAACGATGGTGGAAGTCGTGAGGATGATCGAGGACATCCGAACACCCGACTCGGGAACTCGACCATCATCAGAAGATAACAAAGCCGGGGACGGGGACAGGGACAATGACTTGAATATTCAGACCTTGTAG 1923 45.71 MRLQSLFTASSLLVRIYFLSFIAADLNSDKQALLEFISTVPHGRKINWDSSTPVCTTWVGITCTSDLSNVLALRLPAVGLYGPIPSNTLGKLDALRTLSLRSNNLNGNIPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPSLTFLDLSLNSLNGNIPTSIQNLTRLTNINLQNNSLTGSIPDIGHLKLKQLNLSYNHLSGSIPASLQSFPPSSFEGNLLLCGSPLKNCSLDVAPLPSLSPPGSTPPKKKSEKRVNIGAIVAIALGGFAVLFLLVIMIIVCCIKKKDGEGSSTATAVAKGKGKSGERPREDFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEVVAGKKEFDQQMEIVGRMEQHPNIVPLRAYYYSKDEKLLVYDYAIAGSFSALLRGSRESGRAPPDWEMRVKVSLGSAKGLSHIHSASGGKLIHGNIKSSNILLTQDLNGCVADFGLTPLMNSPPIPSRSTGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPAQSPSRDDVADLPRWVQSVVREEWTSEVFDVELMKYENIEEELVQMLQIAMACVSQVPDMRPTMVEVVRMIEDIRTPDSGTRPSSEDNKAGDGDRDNDLNIQTL 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5658830 5663658 + Sed0027055.3 Sed14g0562 736280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0562 640 SUPERFAMILY Protein kinase-like (PK-like) 343 607 IPR011009 -
Sed14g0562 640 Gene3D Transferase(Phosphotransferase) domain 1 417 631 - -
Sed14g0562 640 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515(InterPro)
Sed14g0562 640 ProSitePatterns Protein kinases ATP-binding region signature. 345 376 IPR017441 GO:0005524(InterPro)
Sed14g0562 640 MobiDBLite consensus disorder prediction 610 640 - -
Sed14g0562 640 FunFam Leucine-rich repeat receptor-like kinase 29 140 - -
Sed14g0562 640 Pfam Protein kinase domain 343 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0562 640 Gene3D Phosphorylase Kinase; domain 1 308 414 - -
Sed14g0562 640 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 416 621 - -
Sed14g0562 640 FunFam Leucine-rich repeat receptor-like protein kinase 141 227 - -
Sed14g0562 640 MobiDBLite consensus disorder prediction 290 314 - -
Sed14g0562 640 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Sed14g0562 640 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Sed14g0562 640 Pfam Leucine Rich Repeat 95 114 IPR001611 GO:0005515(InterPro)
Sed14g0562 640 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Sed14g0562 640 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Sed14g0562 640 FunFam pollen receptor-like kinase 1 308 414 - -
Sed14g0562 640 ProSiteProfiles Protein kinase domain profile. 339 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0562 640 CDD STKc_IRAK 345 610 - -
Sed14g0562 640 Gene3D Ribonuclease Inhibitor 187 228 IPR032675 -
Sed14g0562 640 MobiDBLite consensus disorder prediction 300 314 - -
Sed14g0562 640 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Sed14g0562 640 SUPERFAMILY L domain-like 39 224 - -
Sed14g0562 640 PANTHER OS05G0588300 PROTEIN 14 622 IPR050994 -
Sed14g0562 640 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Sed14g0562 640 MobiDBLite consensus disorder prediction 610 632 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0562 Sed-Chr14:5658830 Sed14g0768 Sed-Chr14:9313712 2.30E-46 dispersed
Sed14g0561 Sed-Chr14:5658830 Sed14g0562 Sed-Chr14:5658830 5.00E-299 tandem
Sed14g0562 Sed-Chr14:5658830 Sed14g0563 Sed-Chr14:5660477 5.00E-299 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80152 PF00069 Pkinase 7.30E-37 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0562 - - - 0.0