Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0585 ATGTCATTTTCTCCGCAATCTTTCCCACCAAGAAAGCGGCGGCCGGCGGCGGCGGCGTTCATCTCCCCCAATTTCTCCGCCCAGCTCCTCCGCCGCAACCTCCTCTCTCTCTGCCAAGAAATCTCCGCCTTGGAACCGCTCCCATTCCTCCTCAACCGCCAATCCAACTCCATCATCCGCAAATCGCGACTGCTCCAACTTCTCCTCCAAGATCTCCAATCCAACCACTCCGCCTCCCTCTGCCTCAACGAAATGTTCATCGTCTTGCAGCGATTCAAAGCCTTGATCGAAGACTGTTCCAACGGCAGCCAGATCTGGCTTCTCACGCACATCGAACCCATCGCTGTAAGTTTTCACGAATTAACCTGCGATTTATCGACTCTGCTTGATATCTTCCCTCTCAACGATGCTGGATTCAGCCAAGACGTTGAGGAATTGTTCCTCCTCTTGAGAAATCAATGCTCAAAATCCGCCGTGTTCGTAGATCCGAGAGACGAACACCTCCGGTTTATGGTTATGAACATGATCGATCGGATTCGAGATGGAATCGTTCCGGATTTCGACGAATTGTCTGAGGTTTTCTCCAGGATTGGGATCGGAGATTCCTCCAGTTGCAGAAACGAAATCGAGAATCTCGAGGATGAGATTCAGAATCAAACCGATGAGAAATCCAGATCTGATGTTGTGGCGTTGATCGGATTCGTTCGTTACGCCAAATGCGTGCTGTTTGGAGCGTCCACGCCGGAATCTGGATCGTTCCGGCGGAGTTTCCGCCGGAACGATTCGGTTTCCGATTTGGCGTTACCGGCGGATTTCAAATGCCCGATTAGTCTGGATTTGATAAACGACCCTGTCGTCGTGGCCACCGGACATACGTACGATCGTGCCGCGATTACCCTCTGGATTGAATCTGGGCACAACACGTGTCCCAAAACGGGCCAGGCCCTGGCCCACACGAACCTGGTTCCGAACCTGGCGTTGAGGAATTTGATAGCGATGTGGTGTCACCAGGAGAGGATTCCGTTTCGTAACGGAAACGGAGAGGAGAGAGTAAACGGCGTTCCGTTGAACAAGGCGGCGTTGGAGGTCATGAAAATGACGACGTCGTTCCTCGTCAACAAACTCGCCACGTCATCAGGTTTGGTAAACGACGTGGTTCACGAGCTCCGTGTGTTGGCCAAAACGGATTCCGACAGCCGCGGATTCATCGCCGGAGCCGGAGCTCTGCCGTTGCTGGTCCCTTACCTGAATTCCGACGACCCGGCGCTGCAGGTCAACGCCGTCACCACGGTGCTCAACCTCTCCATTCTGGAAGCGAACAAGTCTCTGATTATGGAGACCGACGGCGCGTTGATCGGAGTCATTGAGGTGCTCCGGTCCGGCGCCACGTGGGAGGCGAAATCGAACGCCGCCGCCACGATCTTCAGCCTCTCCGGCGTCCATAGTTTCCGGCGGAGATTGGGGAGGAAGACTCGTGTCGTGAAGGGGTTGCTCGATTTGGCTAAAGACGGGCCGATTAGTTCAAAACGGGATGCTCTGTTGACGATTTTGACACTGGCCGGTGACCGGGAAAGCGCCGGGAAGTTAATTGAAGGTGGGGTTATGGAGACGGTGAGTCATGTGATGAACAGCTTACCGGAGGAGGCGGTGACGGTGCTGGAAGTGGTGGTGAGGAAAGGGGGATTTGTGGCGGTTGCTTCTGGTTTTTATGTGATCAAGAAATTGGCGGTGGTTTTGAGAGAAGGCTCCGATCGGGCAAGAGAGAGTGCGGCGGCGGCGCTGGTGACGATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGCTGGCGGCGATGGCTGGAATTGAGAGAGTTATTTGGGAGCTTATGGGGAGTGGGACGATGAGGGGGCGGCGGAAGGCGGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGATTGGACGGAAACGGCGGCGGCGGCGGAGAAGATCATTCGGTGATCTCGAGAATCGTCGGCGATTCCACCACTATTGTTAATTCATCGAGGGGAGCAATTGTTAATAGCTAG 2052 55.02 MSFSPQSFPPRKRRPAAAAFISPNFSAQLLRRNLLSLCQEISALEPLPFLLNRQSNSIIRKSRLLQLLLQDLQSNHSASLCLNEMFIVLQRFKALIEDCSNGSQIWLLTHIEPIAVSFHELTCDLSTLLDIFPLNDAGFSQDVEELFLLLRNQCSKSAVFVDPRDEHLRFMVMNMIDRIRDGIVPDFDELSEVFSRIGIGDSSSCRNEIENLEDEIQNQTDEKSRSDVVALIGFVRYAKCVLFGASTPESGSFRRSFRRNDSVSDLALPADFKCPISLDLINDPVVVATGHTYDRAAITLWIESGHNTCPKTGQALAHTNLVPNLALRNLIAMWCHQERIPFRNGNGEERVNGVPLNKAALEVMKMTTSFLVNKLATSSGLVNDVVHELRVLAKTDSDSRGFIAGAGALPLLVPYLNSDDPALQVNAVTTVLNLSILEANKSLIMETDGALIGVIEVLRSGATWEAKSNAAATIFSLSGVHSFRRRLGRKTRVVKGLLDLAKDGPISSKRDALLTILTLAGDRESAGKLIEGGVMETVSHVMNSLPEEAVTVLEVVVRKGGFVAVASGFYVIKKLAVVLREGSDRARESAAAALVTMCRQGGSEMVTELAAMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGGGGEDHSVISRIVGDSTTIVNSSRGAIVNS 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5876462 5878947 - Sed0009880.1 Sed14g0585 736303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0585 683 Coils Coil 202 229 - -
Sed14g0585 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 342 IPR013083 -
Sed14g0585 683 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed14g0585 683 Pfam Armadillo/beta-catenin-like repeat 398 435 IPR000225 GO:0005515(InterPro)
Sed14g0585 683 CDD RING-Ubox_PUB 269 321 IPR045210 -
Sed14g0585 683 PANTHER U BOX DOMAIN-CONTAINING 52 645 - -
Sed14g0585 683 SUPERFAMILY ARM repeat 379 641 IPR016024 -
Sed14g0585 683 FunFam RING-type E3 ubiquitin transferase 268 340 - -
Sed14g0585 683 Gene3D - 377 640 IPR011989 -
Sed14g0585 683 Pfam U-box domain 269 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed14g0585 683 SUPERFAMILY RING/U-box 258 341 - -
Sed14g0585 683 SMART Ubox_2 271 334 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed14g0585 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2428 Sed-Chr3:21156256 Sed14g0585 Sed-Chr14:5876462 1.20E-287 dispersed
Sed04g0636 Sed-Chr4:4911429 Sed14g0585 Sed-Chr14:5876462 7.20E-70 dispersed
Sed10g0347 Sed-Chr10:2128237 Sed14g0585 Sed-Chr14:5876462 6.60E-30 dispersed
Sed11g0693 Sed-Chr11:9634540 Sed14g0585 Sed-Chr14:5876462 1.40E-34 dispersed
Sed13g1382 Sed-Chr13:19282203 Sed14g0585 Sed-Chr14:5876462 8.00E-39 dispersed
Sed13g1383 Sed-Chr13:19282203 Sed14g0585 Sed-Chr14:5876462 2.00E-32 dispersed
Sed14g0533 Sed-Chr14:5329167 Sed14g0585 Sed-Chr14:5876462 2.50E-12 dispersed
Sed14g0585 Sed-Chr14:5876462 Sed08g2733 Sed-Chr8:39121108 6.40E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0585 - - - 0.0