Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0588 ATGGAGAACAAAGAGACTATCTTGATGCAACGATATGAATTAGGACGGCTGTTGGGGCAGGGAACCTTTGCCAAGGTTTACTATGCTAGAGACGTAAAAACTGGCACCGGTGTGGCTATCAAGGTTATCGACAAAGAGAAGATTTTGAAGGGTGGGATGATTGATCAAATCAAGAGGGAGATATCTGTCATGAGACTAGTTAAGCATCCCAATGTTGTTGAGCTTTATGAGGTTATGGCAAGCAAAACTAAAATTTACTTTGTCATGGAATTTGTGAAAGGCGGTGAGCTATTCAACAAGGTATCCAAAGGAAAGCTTAAAGAAGCTGTTGCGCGGAAATATTTTTGGCAGTTGATCAGTGCTGTCGATTATTGTCACAGTAGAGGGGTATGCCATCGAGATTTGAAACCCGAAAATTTACTATTGGATGAAAATGGTAATCTGAAGGTTTCTGATTTTGGATTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTGCTCCATACTACCTGTGGAACACCTGCCTACGTCGCTCCAGAAGTCATTATCCGGAGAGGTTATGATGGATACAAAGCTGATATTTGGTCGTGTGGAGTGATCTTATTCGTTCTATTGGCTGGTTATCTTCCTTTCCATGATTCAAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTACACCAGAGGCGCGCAAGCTACTATCGAAGATTTTGGATCCTAACCCAAATACAAGGATATCTATTGCCAAAATAATGGGAAGCTCATGGTTAAGAAGGGGGTTGAATGTGAAGCCCGGAATTAATGTCGAAGAAGTTAAAGAAGTTGCTCCTTTAGACATCGATGCAGTGCTTGTGTCTACGGCCGAGGACCATGATTCTGTTAAAGAGCTGAAGCAAGAAGCGGAAAAGCCATTGAATTTAAATGCTTTCGACATAATCTCCTTGTCAGCAGGTTTTGATTTGTCCGGCTTGTTCGAGGAGACTGATCAAAAGAAAGAAGTAAGATTCACATCAAACAAGTCTGCGTCCACCATCATCTCGAAACTGCAAGACGTCGCAAAGTGCTTGAAATTGAAAATCAAGAAGAAAGACAGGGGCCTATTGAAGATCGAAGGATGCAAGGAAGGTCGAAAAGGAGCTGTATGCATCGATGCAGAGATTTTCGAAGTCACCCCATCATTCCATATAGTGGAAATGAAGAAATCAAATGGAGATACTCTGGAATATCGCAAGATTATGAAAGACGATATAAGACCAGCTCTGAAGGACATCGTATGGATCTGGCAAGGCGAGCAGCAGCAACAGCTATCACAAGCAGAACCTGAATCGCAACAACCGTCTCCAATTTCACCAGTTACTACCGTATTGCATTATAACACAGGACTCGTGGAGGCATCTTAG 1428 42.02 MENKETILMQRYELGRLLGQGTFAKVYYARDVKTGTGVAIKVIDKEKILKGGMIDQIKREISVMRLVKHPNVVELYEVMASKTKIYFVMEFVKGGELFNKVSKGKLKEAVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVIIRRGYDGYKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFTPEARKLLSKILDPNPNTRISIAKIMGSSWLRRGLNVKPGINVEEVKEVAPLDIDAVLVSTAEDHDSVKELKQEAEKPLNLNAFDIISLSAGFDLSGLFEETDQKKEVRFTSNKSASTIISKLQDVAKCLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDDIRPALKDIVWIWQGEQQQQLSQAEPESQQPSPISPVTTVLHYNTGLVEAS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5939868 5943098 - Sed0010149.2 Sed14g0588 736306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0588 475 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0588 475 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sed14g0588 475 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0588 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g0588 475 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Sed14g0588 475 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Sed14g0588 475 Gene3D Kinase associated domain 1, KA1 310 436 - -
Sed14g0588 475 Pfam NAF domain 313 371 IPR004041 GO:0007165(InterPro)
Sed14g0588 475 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g0588 475 CDD CIPK_C 317 431 - -
Sed14g0588 475 Gene3D Transferase(Phosphotransferase) domain 1 92 271 - -
Sed14g0588 475 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 424 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed14g0588 475 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Sed14g0588 475 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Sed14g0588 475 CDD STKc_SnRK3 11 265 - -
Sed14g0588 475 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Sed14g0588 475 FunFam Non-specific serine/threonine protein kinase 2 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0588 Sed-Chr14:5939868 Sed14g1514 Sed-Chr14:23449645 7.10E-141 dispersed
Sed14g0587 Sed-Chr14:5939868 Sed14g0588 Sed-Chr14:5939868 1.40E-274 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80161 PF00069 Pkinase 2.20E-75 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0588 K07198 - csv:101209068 775.007