Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0728 ATGTTGTGGGTCGACAAATATCGTCCCAAAACCCTAGATCAGATCACAGTTCATCAAGATGTGGCGCAGAATCTGAAGAAACTGGTTACCGAGCAGGATTGCCCTCATTTGCTCTTCTATGGCCCTTCCGGTTCTGGAAAGAAAACCCTAGTCATGGCCCTTATTAGACAGATGTTTGGAGCCAGTGCGGAAAAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGCTGGAACTAGAACTATTGACATAGAGTTGACCACTTTATCAAGTACAAACCATGTGGAGCTTACTCCCAGCGATGCGGGTTTCCAAGATAGATATATTGTTCAAGAGATAATCAAAGAAATGGCTAAAAACAGGCCAATAGACTCCAAAGGGAAAAGGGGACATAAAGTATTGGTTCTAAATGATGTTCACAAACTATCAAGAGAAGCCCAGCACTCCCTTAGGAGAACAATGGAGAAATATAGCTCATACTGTAGGTTAGTACTTTGCTGCAATAGTTCATCTAGAGTCACCGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGCACCGACAGAAGAGCAAACTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCTCGTATAGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCCATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTTAGCAATCAGGCAATACCACCAATGGATTGGGAGGAGTACATCTGTGAGATAGCCTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTTCCAGGTTCGTGGAAAGTTATATGAGCTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTTAAGAAATTGGATGCTGAATTGAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACATAGGATGCGCCTTGGACAGAAAGCCATCTTCCATGTTGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACGTTCGGTTAA 1065 42.82 MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVHKLSREAQHSLRRTMEKYSSYCRLVLCCNSSSRVTEAIRSRCLNVRINAPTEEQTVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYICEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHVEAFVAKFMSIYKTFLISTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7533756 7540178 - Sed0019827.1 Sed14g0728 736446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0728 354 FunFam Replication factor C subunit 5 1 189 - -
Sed14g0728 354 CDD AAA 19 189 - -
Sed14g0728 354 Gene3D - 190 248 - -
Sed14g0728 354 FunFam replication factor C subunit 3 190 248 - -
Sed14g0728 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 346 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Sed14g0728 354 Gene3D - 252 345 - -
Sed14g0728 354 Pfam DNA polymerase III, delta subunit 18 188 - -
Sed14g0728 354 SMART AAA_5 33 192 IPR003593 GO:0016887(InterPro)
Sed14g0728 354 Pfam RCF1/5-like, AAA+ ATPase lid domain 196 236 - -
Sed14g0728 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed14g0728 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Sed14g0728 354 Gene3D - 1 189 IPR027417 -
Sed14g0728 354 FunFam Replication factor C subunit 3 252 345 - -
Sed14g0728 354 Pfam Replication factor C subunit 3, C-terminal domain 253 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0991 Sed-Chr6:14073763 Sed14g0728 Sed-Chr14:7533756 3.50E-25 dispersed
Sed10g0921 Sed-Chr10:7230816 Sed14g0728 Sed-Chr14:7533756 1.00E-58 dispersed
Sed10g0922 Sed-Chr10:7230816 Sed14g0728 Sed-Chr14:7533756 1.00E-58 dispersed
Sed12g0289 Sed-Chr12:1661296 Sed14g0728 Sed-Chr14:7533756 9.70E-42 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0728 K10756 - csv:101221072 662.529