Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0743 ATGATTATCCACTTACAGGCTCTACTCGGTAACAAATGGGCTGCCATAGCTTCTTACCTTCCACAAAGAACTGATAATGATATTAAAAACTATTGGAACACTCATTTGAAGAAGAAGCTCAAGTCTGCTTTTGAAGATTCTCCTCATCACTCCTCCAAGGGTTTCTTCTTCAATGATTCTTCCAACAGAAGCTTGGACAATATGGATTCCTCCTCCTCTCTCGGCGCAAACCTATCCTCCGCCACCTCGTCGTCCTCAACGTATTACTCGAGTGCCGAGAACATCTCACGCCTACTCGAAGGATGGATGAGATCTTCACCCAAGACTGACGATAACGACAACGAGTACAATAACTTCCATGAGAAACAAAGTCATGATGGAGATTCCATGGTTTCTATCCATTGCTTAGAACCCAAAACCGAGCAAGATAGCGATGGGGTAGCGTCCGGGAAGGCGATCGAGTCGATGGCATCAAAGATGAGTTGTGAAAGTAGTGAAAATGATGAGGATAAGAAAAATAGAAGTGATGAGATAAATAAGAATAACAATAATAATAATAATAATAATAATAATAATAATCCTCCATTGTCATTTCTTGAGAAGTGGTTGCTTGATGACACTGCTGCTCAAGTAGAGGAGATGATGGTATTGTCACCAATGTTCTAA 666 40.84 MIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKSAFEDSPHHSSKGFFFNDSSNRSLDNMDSSSSLGANLSSATSSSSTYYSSAENISRLLEGWMRSSPKTDDNDNEYNNFHEKQSHDGDSMVSIHCLEPKTEQDSDGVASGKAIESMASKMSCESSENDEDKKNRSDEINKNNNNNNNNNNNNNPPLSFLEKWLLDDTAAQVEEMMVLSPMF 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7673793 7675421 + Sed0011943.2 Sed14g0743 736461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0743 221 CDD SANT 1 36 IPR001005 -
Sed14g0743 221 SUPERFAMILY Homeodomain-like 2 41 IPR009057 -
Sed14g0743 221 Pfam Myb-like DNA-binding domain 2 36 IPR001005 -
Sed14g0743 221 ProSiteProfiles Myb-like domain profile. 1 36 IPR001005 -
Sed14g0743 221 SMART sant 1 38 IPR001005 -
Sed14g0743 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 40 IPR017930 -
Sed14g0743 221 MobiDBLite consensus disorder prediction 106 128 - -
Sed14g0743 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 182 - GO:0009733(PANTHER)
Sed14g0743 221 MobiDBLite consensus disorder prediction 156 194 - -
Sed14g0743 221 Gene3D - 1 55 - -
Sed14g0743 221 MobiDBLite consensus disorder prediction 163 178 - -
Sed14g0743 221 MobiDBLite consensus disorder prediction 179 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0743 K09422 - - csv:101205447 238.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0743 Sed-Chr14:7673793 Sed12g1192 Sed-Chr12:8090232 7.80E-34 dispersed
Sed14g0742 Sed-Chr14:7673793 Sed14g0743 Sed-Chr14:7673793 6.90E-110 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g925 . Blo16g01113 . Bda11g01212 Bpe13g01407 . Bma14g01651 . Cmo04g01746 Cmo18g01162 . Cma18g01143 . Car18g01054 Sed14g0743 Cpe09g00186 Cpe01g01473 Bhi07g01553 Tan04g1070 Cmetu01g1022 Lac13g0327 Hepe10g1751 . . Cla05g02434 Cam05g2619 Cec05g2652 Cco05g2690 Clacu05g2621 Cmu05g2475 Cre05g2588 Cone13ag0952 Cone19ag0941 . . Lsi04g00409 Csa05g02464 Chy10g01011 Cme10g00407 . Blo11g00781 Bda07g01471 Bda11g01212 Bpe11g01645 . . . . . . Cma04g01666 . Car04g01705 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014901 0 1 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 1 1 1 0 0 0 0 0 1 1 1 0 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40567 PF00249 Myb_DNA-binding 4.40E-09 CL0123 Sed TF