Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0860 ATGTGGGATCTGAACGATTGTCCTGATGAGATGAAAGAGGGCAATGAATCGGAAGCATCCATTGAGAAAGGAAAGGGAGTGGGTTCCCTTTCGGATTCAAGCTCCTCGGCCGTGGTTGTCGAAGACGGGCTCGATGAGGTTATGCAAATGGAGGAACCCAGCCCCGTGACTCGCCAGTTCTTCCCACTCGACGCCGCAACCACTGCTTCTTCCGCCTTCCCCCGGGCTCACTGGGTTGGAGTCAAATTCGCCCATTCCTATCCTAATAATTCGGTCAGCCCGGCCGAGCTTTCGCACCCGATAAAGAAGAGCCGCCGCGGACCGAGGTCTCGTAGCTCTCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGATGGGAGTCACATATTTGGGATTGTGGAAAGCAAGTTTATCTTGGTGGATTTGATACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCTATTAAATTCCGAGGACGGGAGGCCGACATAAACTTCAGCATCGAAGATTACGAGGACGATTTGAAACAGATGGGAAATTTAACGAAAGAGGAATTTGTACATGTACTTCGCCGACAAAGCACTGGGTATCCTAGAGGCAGCTCTAAGTATAGAGGTGTAACGCTTCACAAGTGTGGTAGATGGGAAGCCAGAATGGGCCAATTTCTTGGCAAAAAGTATGTTTATTTGGGGTTGTTTGATACAGAAGTTGAAGCCGCAAGGGCGTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCGGTCACCAATTTTGATCCCTCCATCTACGAGAATGAACTGAATCCCACAAATGATTCAACTAGGGATGTACCCGATCACAGTCTGGATTTGAGTTTGGGGAATTCAAGTTCAAAGCAAAATGACACCCCAAATGCTAATTCCATAGATCCACAACGCAATCAAGGATTTAGGCTTCCACAGGTTCATTGGGTGCAAGAATCAAGTGGAGGAAATGGAAACAAAAATTACAATGAAGAGATTAGAAACAGCAGGTATCTGGAGAGTGAAACTATGCAGCTGCTTAGCCAAACGCACATTCAATCTCCAAGTTCATTTGGGCAATTACTCAGCCGGCCGATGGCGGGTCGAGATCACAATCCAAGCCTCAGTTATCAAATACAATTTTCGGGGAGCAGTGGAATTGGAAGTGATCTATCACTGTCTTTGAGTGATCAAAATCAAGTTCTTGCAACAACTGCTGCAGCATCATCAGGATTCTCATCTTCCAAAAATTGGCTGCAAAAGAATGGGTTTCACTGTCTCATGAGACCCTCCAGCTGA 1314 47.34 MWDLNDCPDEMKEGNESEASIEKGKGVGSLSDSSSSAVVVEDGLDEVMQMEEPSPVTRQFFPLDAATTASSAFPRAHWVGVKFAHSYPNNSVSPAELSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGREADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGYPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTNDSTRDVPDHSLDLSLGNSSSKQNDTPNANSIDPQRNQGFRLPQVHWVQESSGGNGNKNYNEEIRNSRYLESETMQLLSQTHIQSPSSFGQLLSRPMAGRDHNPSLSYQIQFSGSSGIGSDLSLSLSDQNQVLATTAAASSGFSSSKNWLQKNGFHCLMRPSS 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17108621 17111324 - Sed0005586.1 Sed14g0860 736578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0860 437 ProSiteProfiles AP2/ERF domain profile. 114 170 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677(InterPro)
Sed14g0860 437 PRINTS Ethylene responsive element binding protein signature 245 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 PRINTS Ethylene responsive element binding protein signature 207 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 CDD AP2 114 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 SUPERFAMILY DNA-binding domain 205 265 IPR016177 GO:0003677(InterPro)
Sed14g0860 437 Pfam AP2 domain 114 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 Pfam AP2 domain 205 255 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 CDD AP2 205 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 FunFam AP2-like ethylene-responsive transcription factor 113 172 - -
Sed14g0860 437 FunFam AP2-like ethylene-responsive transcription factor 205 265 - -
Sed14g0860 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 66 328 - -
Sed14g0860 437 MobiDBLite consensus disorder prediction 1 20 - -
Sed14g0860 437 SMART rav1_2 114 176 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 SMART rav1_2 206 269 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 ProSiteProfiles AP2/ERF domain profile. 206 263 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 MobiDBLite consensus disorder prediction 266 311 - -
Sed14g0860 437 Gene3D AP2/ERF domain 205 264 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0860 437 MobiDBLite consensus disorder prediction 91 114 - -
Sed14g0860 437 MobiDBLite consensus disorder prediction 1 35 - -
Sed14g0860 437 MobiDBLite consensus disorder prediction 287 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3462 Sed-Chr5:43468200 Sed14g0860 Sed-Chr14:17108621 7.80E-123 dispersed
Sed07g2411 Sed-Chr7:39948050 Sed14g0860 Sed-Chr14:17108621 5.90E-59 dispersed
Sed10g0652 Sed-Chr10:4456660 Sed14g0860 Sed-Chr14:17108621 1.80E-158 dispersed
Sed13g1830 Sed-Chr13:23227047 Sed14g0860 Sed-Chr14:17108621 2.40E-41 dispersed
Sed14g0860 Sed-Chr14:17108621 Sed14g0948 Sed-Chr14:18604434 3.70E-43 dispersed
Sed14g0860 Sed-Chr14:17108621 Sed14g0861 Sed-Chr14:17108621 1.80E-175 tandem
Sed10g0651 Sed-Chr10:4456660 Sed14g0860 Sed-Chr14:17108621 1.20E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40586 PF00847 AP2 7.00E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0860 K09284 - csv:101214724 550.821