Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0864 ATGGACGGCGGAGATCAGGGGACGAGAAAGAGAGGGGTGGGTGAGAATCAGAGGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAATGGGTGGCTGAGATTCGAGAGCCCAACAAGCGCTCTAGGATTTGGCTGGGCTCCTACTCTTCCCCCGTCGCCGCCGCCCGCGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCCTCTGCCCGCCTCAATTTCCCCGACCTCTTAGCCCGGGAGGACGGCCGCGGAGTCACCGCCCCCGACATGTCCGCCGCCTCCATCCGCAAGAAGGCCACCGAGGTCGGCGCCCGCGTCGACGCCCTCGAAACTTCCTTAGCCGCCCAACACGCATCCCCCTCTCCGCCCCAGATTAAACCCTGCGCCGCCTTCCTGGATCGGGTCGACTTGAACAAGTTACCCGACCCGGAAGACGATGACCAAGAACCCGAGTTCGACTGA 468 63.68 MDGGDQGTRKRGVGENQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPDLLAREDGRGVTAPDMSAASIRKKATEVGARVDALETSLAAQHASPSPPQIKPCAAFLDRVDLNKLPDPEDDDQEPEFD 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17345118 17346580 - Sed0002958.1 Sed14g0864 736582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0864 155 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0864 155 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0864 155 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0864 155 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 151 - -
Sed14g0864 155 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Sed14g0864 155 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677(InterPro)
Sed14g0864 155 CDD AP2 20 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0864 155 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0864 155 Pfam AP2 domain 20 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0864 155 SMART rav1_2 19 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0932 Sed-Chr11:23467725 Sed14g0864 Sed-Chr14:17345118 5.30E-38 dispersed
Sed12g1689 Sed-Chr12:28127560 Sed14g0864 Sed-Chr14:17345118 2.80E-17 dispersed
Sed13g1932 Sed-Chr13:24194781 Sed14g0864 Sed-Chr14:17345118 9.00E-20 dispersed
Sed14g0864 Sed-Chr14:17345118 Sed10g2031 Sed-Chr10:36862716 1.40E-16 dispersed
Sed03g0012 Sed-Chr3:146124 Sed14g0864 Sed-Chr14:17345118 1.20E-17 transposed
Sed01g2682 Sed-Chr1:21493109 Sed14g0864 Sed-Chr14:17345118 5.10E-39 wgd
Sed10g0653 Sed-Chr10:4487343 Sed14g0864 Sed-Chr14:17345118 5.40E-54 wgd
Sed13g1770 Sed-Chr13:22730158 Sed14g0864 Sed-Chr14:17345118 9.90E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40588 PF00847 AP2 1.80E-11 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0864 K09286 - csv:101214481 220.32