Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0865 ATGGAACCCAGCGTCCACAACCTCATCCAATTGCTCTCCTCTACCGATTCCGATTGCCACGCCGCGGTCTCCAAGTGCATTTCTCGTCTCGGTCGGGGCCGGGTGGGCCACGCTCGATTCCGTAGCGCTCCTCTCCCTTTGCCTCAAACTCCTAAACCCTACTACGCCACTCCAATCCAACAGATCCCGCCTTCCCCCTCTACCCATCATTCTTTTGTCTCGTCTTTGACCGGCGACACAGACAGCAAGCACCTCTCCTCCGCCGGGAAGCCACCTCTCTCGACTTCTTCCCTCAAGAGGAAGTGCGGCAGCTCCGATCACTTGGGATCCGATCGATGCCATTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTTGTGAGGGTGGCGGCGACAAGCTTGAAAATGGCGGATATTCCACCGGACGATTACTCGTGGAGAAAATACGGTCAAAAGCCTATTAAAGGCTCTCCTCATCCCAGAGGGTATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCGATGTTGGTCGTCACCTACGAAGGAGAACACAATCATACTCTCGCTCTATCCGAAACCTCCAGTCCTCGTAGCACATCGTGA 639 55.24 MEPSVHNLIQLLSSTDSDCHAAVSKCISRLGRGRVGHARFRSAPLPLPQTPKPYYATPIQQIPPSPSTHHSFVSSLTGDTDSKHLSSAGKPPLSTSSLKRKCGSSDHLGSDRCHCSKKRKLRVKRVVRVAATSLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLALSETSSPRSTS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17452343 17454177 - Sed0023555.1 Sed14g0865 736583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0865 212 ProSiteProfiles WRKY domain profile. 135 201 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g0865 212 MobiDBLite consensus disorder prediction 61 103 - -
Sed14g0865 212 FunFam WRKY transcription factor 65 124 201 - -
Sed14g0865 212 SMART WRKY_cls 140 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g0865 212 MobiDBLite consensus disorder prediction 54 112 - -
Sed14g0865 212 Pfam Plant zinc cluster domain 99 138 IPR018872 -
Sed14g0865 212 Gene3D WRKY domain 124 201 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g0865 212 Pfam WRKY DNA -binding domain 142 198 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g0865 212 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 205 IPR044810 GO:0003700(InterPro)
Sed14g0865 212 SUPERFAMILY WRKY DNA-binding domain 137 199 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2093 Sed-Chr13:25655946 Sed14g0865 Sed-Chr14:17452343 2.40E-44 dispersed
Sed13g2094 Sed-Chr13:25655946 Sed14g0865 Sed-Chr14:17452343 7.30E-23 dispersed
Sed14g0865 Sed-Chr14:17452343 Sed05g2081 Sed-Chr5:34023745 3.40E-18 dispersed
Sed01g2685 Sed-Chr1:21514376 Sed14g0865 Sed-Chr14:17452343 5.20E-58 wgd
Sed10g0657 Sed-Chr10:4510509 Sed14g0865 Sed-Chr14:17452343 2.70E-68 wgd
Sed13g1775 Sed-Chr13:22795985 Sed14g0865 Sed-Chr14:17452343 1.90E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40589 PF03106 WRKY 2.00E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0865 - - - 0.0