Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0871 ATGGATAACGAAGCTTCTAATAGTTCAACACAATCTGCAGTCAACAATCCAGCTCCAACAGTCCATAGACAGAATAATATAGGAGGGCATTCAACATCTATTTTATCTCCATCTGGAATATCATCTTGGGCTAGGAGTTTTAGAAATCCACAGCCACCCGAAGCAGCCGAAAATGACTCTAAAGCAGAAAATGTTGGGATGTCTGCAATTGCTCGTTTCGGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCGCCTGTACGAGATGATGGTGTTGCAGATACCAAATCAGCAGCACAATCTGGTGTTTTCGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCACGGAACAAACGAAGATATCAGGAAGGAGGATTTGATTTGGATATGTCATATATAACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGCCTTTTTGGATACCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATATAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGAAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAAGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGGTCTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCCATTAACTATTTTAATCAGAAAAGATGTGTGGATGGAAAGGCTTTGGTTATCCCTAGCCAGATTAGGTATGTCAGGTATTTTGAGCACATTTTAACAAATTTCAGCGGAAATACTCCATCCGGACGGAGGTGCATGGTGAGAGGTTTTCGGCTTCACAAGTGCCCATATTGGGTTAGACCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCGACAAAAAATCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGCTTAGGGCACCAAAGAAAGGATTTGTTGTCTTTGCACTGCCAGGTGAGCGTTGTTTGACAGAGTTATCTGGGGACTTCAAGATTCATTTCCATGACCGCCATGGAGATTTTTATTGTTGGTTAAATACAACAATGACAGAAAACAAAGTATTACTAAGTGACACTGATCTTGATGGTTTTGATAAGAGAAAACTTCCAACTCCTGAATTCCAGGTACAAGTTGTGATGATAGACTATGATGGTACATTACCAGCACGGTTCAAAACCGATTCTGCCGGAAAAGGATCTGATCGTCGCTCCATTCGTGATCGTGCATCGGGTCATGAAGCAGCTCAAACCAGCAGAAACAAAATTCCTGAGGATGAAGAAAATGATGACAATGTATTCTCTGATAGTGATGAAGAAAATGGCAACACAAAAACCAGTGTAGCTGAATCAACTTCTGGAAATGGAACTGCAAACGCAGACCATTCATCAACAGCCATTGCTTCAGAAAAGATTGGTAGTTTATCTCTAGGGAATGAGAAAAAGTTGGAAATGAAGGATTCATCAAAAGAAGCTAACATTGATGGGTTTGAGACCCCAAATTTGGGCTCAGCAATGGCAAGTGATTTCAAGGCAATAGCTGCTGATGCGTCAGTTTTCAGTTTTGGGGATGAAGAAGATTTTGATAGTGAATAA 1788 39.93 MDNEASNSSTQSAVNNPAPTVHRQNNIGGHSTSILSPSGISSWARSFRNPQPPEAAENDSKAENVGMSAIARFGSGFGLRIPSMSPVRDDGVADTKSAAQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSRNKRRYQEGGFDLDMSYITENIIAMGFPAGHMSSGLFGYLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMVCSLLLFLKFFQTSAEAINYFNQKRCVDGKALVIPSQIRYVRYFEHILTNFSGNTPSGRRCMVRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKDLMPEDFWLRAPKKGFVVFALPGERCLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPEFQVQVVMIDYDGTLPARFKTDSAGKGSDRRSIRDRASGHEAAQTSRNKIPEDEENDDNVFSDSDEENGNTKTSVAESTSGNGTANADHSSTAIASEKIGSLSLGNEKKLEMKDSSKEANIDGFETPNLGSAMASDFKAIAADASVFSFGDEEDFDSE 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17546161 17552201 + Sed0010691.1 Sed14g0871 736589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0871 595 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Sed14g0871 595 MobiDBLite consensus disorder prediction 1 63 - -
Sed14g0871 595 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Sed14g0871 595 MobiDBLite consensus disorder prediction 1 48 - -
Sed14g0871 595 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Sed14g0871 595 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Sed14g0871 595 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Sed14g0871 595 MobiDBLite consensus disorder prediction 456 561 - -
Sed14g0871 595 Pfam PTEN2, C2 domain 321 449 - -
Sed14g0871 595 MobiDBLite consensus disorder prediction 503 536 - -
Sed14g0871 595 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 524 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed14g0871 595 SMART PTEN_C2_2 319 447 IPR014020 -
Sed14g0871 595 MobiDBLite consensus disorder prediction 460 492 - -
Sed14g0871 595 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 312 IPR029021 -
Sed14g0871 595 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Sed14g0871 595 CDD PTP_PTEN 145 308 IPR045101 GO:0016791(InterPro)
Sed14g0871 595 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0664 Sed-Chr10:4563138 Sed14g0871 Sed-Chr14:17546161 9.20E-287 dispersed
Sed10g0665 Sed-Chr10:4563138 Sed14g0871 Sed-Chr14:17546161 4.10E-218 dispersed
Sed10g1999 Sed-Chr10:36581360 Sed14g0871 Sed-Chr14:17546161 4.20E-186 dispersed
Sed14g0871 Sed-Chr14:17546161 Sed14g0873 Sed-Chr14:17546161 8.60E-245 dispersed
Sed14g0871 Sed-Chr14:17546161 Sed14g0872 Sed-Chr14:17546161 0.00E+00 tandem
Sed10g0663 Sed-Chr10:4563138 Sed14g0871 Sed-Chr14:17546161 9.20E-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0871 K01110 - csv:101213277 989.949