Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0872 ATGGATAACGAAGCTTCTAATAGTTCAACACAATCTGCAGTCAACAATCCAGCTCCAACAGTCCATAGACAGAATAATATAGGAGGGCATTCAACATCTATTTTATCTCCATCTGGAATATCATCTTGGGCTAGGAGTTTTAGAAATCCACAGCCACCCGAAGCAGCCGAAAATGACTCTAAAGCAGAAAATGTTGGGATGTCTGCAATTGCTCGTTTCGGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCGCCTGTACGAGATGATGGTGTTGCAGATACCAAATCAGCAGCACAATCTGGTGTTTTCGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCACGGAACAAACGAAGATATCAGGAAGGAGGATTTGATTTGGATATGTCATATATAACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGCCTTTTTGGATACCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATATAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGAAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAAGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGGTCTGCAGCCTCCTTTTATTCCTAAAGGTCAGATTGTATAGTATACTTCTCATAAGTTCTTCCAAACATCAGCAGAGGCCATTAACTATTTTAATCAGAAAAGATGTGTGGATGGAAAGGCTTTGGTTATCCCTAGCCAGATTGTTAGACATTCAAATCCTTTTATTTTCTTCTTCTTTTTCTTTTCTTTTTTTTTTCCTGATGCCTCTTTACTTGATGCAGAGGTATGTCAGGTATTTTGAGCACATTTTAACAAATTTCAGCGGAAATACTCCATCCGGACGGAGGTGCATGGTGAGAGGTTTTCGGCTTCACAAGTGCCCATATTGGGTTAGACCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCGACAAAAAATCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGCTTAGGGCACCAAAGAAAGGATTTGTTGTCTTTGCACTGCCAGGTGAGCGTTGTTTGACAGAGTTATCTGGGGACTTCAAGATTCATTTCCATGACCGCCATGGAGATTTTTATTGTTGGTTAAATACAACAATGACAGAAAACAAAGTATTACTAAGTGACACTGATCTTGATGGTTTTGATAAGAGAAAACTTCCAACTCCTGAATTCCAGGTACAAGTTGTGATGATAGACTATGATGGTACATTACCAGCACGGTTCAAAACCGATTCTGCCGGAAAAGGATCTGATCGTCGCTCCATTCGTGATCGTGCATCGGGTCATGAAGCAGCTCAAACCAGCAGAAACAAAATTCCTGAGGATGAAGAAAATGATGACAATGTATTCTCTGATAGTGATGAAGAAAATGGCAACACAAAAACCAGTGTAGCTGAATCAACTTCTGGAAATGGAACTGCAAACGCAGACCATTCATCAACAGCCATTGCTTCAGAAAAGATTGGTAGTTTATCTCTAGGGAATGAGAAAAAGTTGGAAATGAAGGATTCATCAAAAGAAGCTAACATTGATGGGTTTGAGACCCCAAATTTGGGCTCAGCAATGGCAAGTGATTTCAAGGCAATAGCTGCTGATGCGTCAGTTTTCAGTTTTGGGGATGAAGAAGATTTTGATAGTGAATAA 1896 39.35 MDNEASNSSTQSAVNNPAPTVHRQNNIGGHSTSILSPSGISSWARSFRNPQPPEAAENDSKAENVGMSAIARFGSGFGLRIPSMSPVRDDGVADTKSAAQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSRNKRRYQEGGFDLDMSYITENIIAMGFPAGHMSSGLFGYLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMVCSLLLFLKVRLYSILLISSSKHQQRPLTILIRKDVWMERLWLSLARLLDIQILLFSSSFSFLFFFLMPLYLMQRYVRYFEHILTNFSGNTPSGRRCMVRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKDLMPEDFWLRAPKKGFVVFALPGERCLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPEFQVQVVMIDYDGTLPARFKTDSAGKGSDRRSIRDRASGHEAAQTSRNKIPEDEENDDNVFSDSDEENGNTKTSVAESTSGNGTANADHSSTAIASEKIGSLSLGNEKKLEMKDSSKEANIDGFETPNLGSAMASDFKAIAADASVFSFGDEEDFDSE 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17546161 17552201 + Sed0010691.2 Sed14g0872 736590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0872 631 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 300 IPR000387 GO:0016311(InterPro)
Sed14g0872 631 MobiDBLite consensus disorder prediction 1 63 - -
Sed14g0872 631 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Sed14g0872 631 MobiDBLite consensus disorder prediction 496 528 - -
Sed14g0872 631 MobiDBLite consensus disorder prediction 1 48 - -
Sed14g0872 631 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 278 - -
Sed14g0872 631 ProSiteProfiles C2 tensin-type domain profile. 357 484 IPR014020 -
Sed14g0872 631 MobiDBLite consensus disorder prediction 539 572 - -
Sed14g0872 631 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Sed14g0872 631 MobiDBLite consensus disorder prediction 492 597 - -
Sed14g0872 631 SMART PTEN_C2_2 355 483 IPR014020 -
Sed14g0872 631 Pfam PTEN2, C2 domain 357 485 - -
Sed14g0872 631 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 272 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed14g0872 631 ProSiteProfiles Phosphatase tensin-type domain profile. 135 350 IPR029023 -
Sed14g0872 631 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 270 IPR029021 -
Sed14g0872 631 Gene3D Protein tyrosine phosphatase superfamily 120 289 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0871 Sed-Chr14:17546161 Sed14g0872 Sed-Chr14:17546161 0.00E+00 tandem
Sed14g0872 Sed-Chr14:17546161 Sed14g0873 Sed-Chr14:17546161 4.60E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0872 K01110 - csv:101213277 916.761