Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0873 ATGGATAACGAAGCTTCTAATAGTTCAACACAATCTGCAGTCAACAATCCAGCTCCAACAGTCCATAGACAGAATAATATAGGAGGGCATTCAACATCTATTTTATCTCCATCTGGAATATCATCTTGGGCTAGGAGTTTTAGAAATCCACAGCCACCCGAAGCAGCCGAAAATGACTCTAAAGCAGAAAATGTTGGGATGTCTGCAATTGCTCGTTTCGGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCGCCTGTACGAGATGATGGTGTTGCAGATACCAAATCAGCAGCACAATCTGGTGTTTTCGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCACGGAACAAACGAAGATATCAGGAAGGAGGATTTGATTTGGATATGTCATATATAACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGCCTTTTTGGATACCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATATAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGAAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAAGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGGTCTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCCATTAACTATTTTAATCAGAAAAGATGTGTGGATGGAAAGGCTTTGGTTATCCCTAGCCAGATTAGGTATGTCAGGTATTTTGAGCACATTTTAACAAATTTCAGCGGAAATACTCCATCCGGACGGAGGTGCATGGTGAGAGGTTTTCGGCTTCACAAGTGCCCATATTGGGTTAGACCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCGACAAAAAATCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGCTTAGGGCACCAAAGAAAGGATTTGTTGTCTTTGCACTGCCAGGTGAGCGTTGTTTGACAGAGTTATCTGGGGACTTCAAGATTCATTTCCATGACCGCCATGGAGATTTTTATTGGTCAGTTGATTTTCTTGTCACTTCCAATCTTGTTTATTAG 1263 39.9 MDNEASNSSTQSAVNNPAPTVHRQNNIGGHSTSILSPSGISSWARSFRNPQPPEAAENDSKAENVGMSAIARFGSGFGLRIPSMSPVRDDGVADTKSAAQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSRNKRRYQEGGFDLDMSYITENIIAMGFPAGHMSSGLFGYLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMVCSLLLFLKFFQTSAEAINYFNQKRCVDGKALVIPSQIRYVRYFEHILTNFSGNTPSGRRCMVRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKDLMPEDFWLRAPKKGFVVFALPGERCLTELSGDFKIHFHDRHGDFYWSVDFLVTSNLVY 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17546161 17552201 + Sed0010691.3 Sed14g0873 736591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0873 420 ProSiteProfiles C2 tensin-type domain profile. 321 420 IPR014020 -
Sed14g0873 420 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 312 IPR029021 -
Sed14g0873 420 MobiDBLite consensus disorder prediction 1 63 - -
Sed14g0873 420 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 404 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed14g0873 420 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Sed14g0873 420 Pfam PTEN2, C2 domain 321 411 - -
Sed14g0873 420 MobiDBLite consensus disorder prediction 1 48 - -
Sed14g0873 420 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Sed14g0873 420 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Sed14g0873 420 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Sed14g0873 420 CDD PTP_PTEN 145 308 IPR045101 GO:0016791(InterPro)
Sed14g0873 420 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Sed14g0873 420 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g0871 Sed-Chr14:17546161 Sed14g0873 Sed-Chr14:17546161 8.60E-245 dispersed
Sed14g0872 Sed-Chr14:17546161 Sed14g0873 Sed-Chr14:17546161 4.60E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0873 K01110 - csv:101213277 723.391