Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0873 | ATGGATAACGAAGCTTCTAATAGTTCAACACAATCTGCAGTCAACAATCCAGCTCCAACAGTCCATAGACAGAATAATATAGGAGGGCATTCAACATCTATTTTATCTCCATCTGGAATATCATCTTGGGCTAGGAGTTTTAGAAATCCACAGCCACCCGAAGCAGCCGAAAATGACTCTAAAGCAGAAAATGTTGGGATGTCTGCAATTGCTCGTTTCGGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCGCCTGTACGAGATGATGGTGTTGCAGATACCAAATCAGCAGCACAATCTGGTGTTTTCGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCACGGAACAAACGAAGATATCAGGAAGGAGGATTTGATTTGGATATGTCATATATAACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGCCTTTTTGGATACCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATATAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGAAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAAGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGGTCTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCCATTAACTATTTTAATCAGAAAAGATGTGTGGATGGAAAGGCTTTGGTTATCCCTAGCCAGATTAGGTATGTCAGGTATTTTGAGCACATTTTAACAAATTTCAGCGGAAATACTCCATCCGGACGGAGGTGCATGGTGAGAGGTTTTCGGCTTCACAAGTGCCCATATTGGGTTAGACCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCGACAAAAAATCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGCTTAGGGCACCAAAGAAAGGATTTGTTGTCTTTGCACTGCCAGGTGAGCGTTGTTTGACAGAGTTATCTGGGGACTTCAAGATTCATTTCCATGACCGCCATGGAGATTTTTATTGGTCAGTTGATTTTCTTGTCACTTCCAATCTTGTTTATTAG | 1263 | 39.9 | MDNEASNSSTQSAVNNPAPTVHRQNNIGGHSTSILSPSGISSWARSFRNPQPPEAAENDSKAENVGMSAIARFGSGFGLRIPSMSPVRDDGVADTKSAAQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSRNKRRYQEGGFDLDMSYITENIIAMGFPAGHMSSGLFGYLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMVCSLLLFLKFFQTSAEAINYFNQKRCVDGKALVIPSQIRYVRYFEHILTNFSGNTPSGRRCMVRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKDLMPEDFWLRAPKKGFVVFALPGERCLTELSGDFKIHFHDRHGDFYWSVDFLVTSNLVY | 420 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 17546161 | 17552201 | + | Sed0010691.3 | Sed14g0873 | 736591 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0873 | 420 | ProSiteProfiles | C2 tensin-type domain profile. | 321 | 420 | IPR014020 | - | |
Sed14g0873 | 420 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 148 | 312 | IPR029021 | - | |
Sed14g0873 | 420 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Sed14g0873 | 420 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 122 | 404 | IPR051281 | GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER) | |
Sed14g0873 | 420 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 251 | 261 | IPR016130 | GO:0016311(InterPro) | |
Sed14g0873 | 420 | Pfam | PTEN2, C2 domain | 321 | 411 | - | - | |
Sed14g0873 | 420 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Sed14g0873 | 420 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 249 | 288 | IPR000387 | GO:0016311(InterPro) | |
Sed14g0873 | 420 | Gene3D | Protein tyrosine phosphatase superfamily | 120 | 317 | IPR029021 | - | |
Sed14g0873 | 420 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 135 | 314 | IPR029023 | - | |
Sed14g0873 | 420 | CDD | PTP_PTEN | 145 | 308 | IPR045101 | GO:0016791(InterPro) | |
Sed14g0873 | 420 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 214 | 269 | - | - | |
Sed14g0873 | 420 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 | 120 | 317 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed14g0871 | Sed-Chr14:17546161 | Sed14g0873 | Sed-Chr14:17546161 | 8.60E-245 | dispersed | |
Sed14g0872 | Sed-Chr14:17546161 | Sed14g0873 | Sed-Chr14:17546161 | 4.60E-220 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0873 | K01110 | - | csv:101213277 | 723.391 |