Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0876 ATGGCTCTCCACGATGAACCCCAACTCCACCAGATTCAAACAGCCCACTCTTTGGCTCTTGATTCCCTCTTCTCTGAAGAACTCTCCTGCCATGAAGATTTGGGCGCAAATGGGGCCGATGAAGACGAAGATACCCATTACTGGGAAACTCTGAGAATCCAAAATGACCCACTTATGGAGGATGATGATCTTGAGTTGTTGCGGTCTCTCATTTCAAAACAAGAGCTGCCCCATTTTTGCTACGATGGGTTTCTTATTCAAGCTCGGAATGAAGCATTGTCTTGGATTTTTAGAGTCAAAGATCAGTGCTGTTTCTCTGGTTTGACCTTTCTTCTTGCTGTTAATTACTTTGATAGATTTGTTTCAAATGTGAGGTTTCAGAGGGATAAGCCATGGATGAGTCAGCTTGTTGCTGTTGCTTGCCTCTCCTTGGCTGCCAAAGTGGAGGAAACCCATGTTCCTCTTCTCCTGGACCTTCAAGTGGTGGAGTCCAAGTTTTTGTTTGAAGCCAAGACCATTCAAAGAATGGAGCTGTTGGTGTTGTCAGCCCTTCAATGGAAAATGCATCCTGTTACCCCTTTTTCCTTTTTTCATCTCATTATCAGGAGGTTGCCTTTGAAGAACCATATGCTTTGGGAGCTTCTTGGGAGGTTTCAGAGTCATCTCCTTTCTATCATAGCTGATCATAAATTCTTGTGCTACCTGCCTTCTGTCTTGGCCACTGCAACCATATTGCATATCATTAATGAGATGGAGCCATATAATTTCTTGGAATACCAGAATGAGCTTCGCTGTGTACTTAAAATTAATAAGAAACACCTAGATGAATGCTACAAGCTCATCATTGATTCACGGGGCAGTCATGGCAATCCTCAAAATCCTATGAACAAAAGCAAGCCAATGTGTGGACCATGCAGTCCTTGCGATGTTATGGACGGATACTTCATCTCCGATTCCTCGAATGATTCGTGGCAAATGGTACCATCTATCTCACCCTAG 999 43.54 MALHDEPQLHQIQTAHSLALDSLFSEELSCHEDLGANGADEDEDTHYWETLRIQNDPLMEDDDLELLRSLISKQELPHFCYDGFLIQARNEALSWIFRVKDQCCFSGLTFLLAVNYFDRFVSNVRFQRDKPWMSQLVAVACLSLAAKVEETHVPLLLDLQVVESKFLFEAKTIQRMELLVLSALQWKMHPVTPFSFFHLIIRRLPLKNHMLWELLGRFQSHLLSIIADHKFLCYLPSVLATATILHIINEMEPYNFLEYQNELRCVLKINKKHLDECYKLIIDSRGSHGNPQNPMNKSKPMCGPCSPCDVMDGYFISDSSNDSWQMVPSISP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17592829 17594832 + Sed0010556.1 Sed14g0876 736594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0876 332 CDD CYCLIN_AtCycD-like_rpt1 88 186 - -
Sed14g0876 332 Gene3D - 190 279 - -
Sed14g0876 332 ProSitePatterns Cyclins signature. 89 120 IPR048258 -
Sed14g0876 332 SMART Cyclin_C_2 191 308 IPR004367 -
Sed14g0876 332 FunFam D6-type cyclin 72 189 - -
Sed14g0876 332 Gene3D - 87 189 - -
Sed14g0876 332 PANTHER CYCLINS 47 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed14g0876 332 Pfam Cyclin, N-terminal domain 87 188 IPR006671 -
Sed14g0876 332 SMART cyclin_7 94 182 IPR013763 -
Sed14g0876 332 SUPERFAMILY Cyclin-like 60 189 IPR036915 -
Sed14g0876 332 Pfam Cyclin, C-terminal domain 191 285 IPR004367 -
Sed14g0876 332 CDD CYCLIN_AtCycD-like_rpt2 191 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0667 Sed-Chr10:4578775 Sed14g0876 Sed-Chr14:17592829 1.80E-76 dispersed
Sed10g0668 Sed-Chr10:4578775 Sed14g0876 Sed-Chr14:17592829 1.80E-76 dispersed
Sed13g0477 Sed-Chr13:3252165 Sed14g0876 Sed-Chr14:17592829 1.50E-61 dispersed
Sed13g1782 Sed-Chr13:22857081 Sed14g0876 Sed-Chr14:17592829 1.60E-39 dispersed
Sed14g0525 Sed-Chr14:5238658 Sed14g0876 Sed-Chr14:17592829 1.80E-19 dispersed
Sed14g0876 Sed-Chr14:17592829 Sed14g0996 Sed-Chr14:19366486 2.40E-34 dispersed
Sed10g0666 Sed-Chr10:4578775 Sed14g0876 Sed-Chr14:17592829 1.20E-118 wgd
Sed13g1781 Sed-Chr13:22857081 Sed14g0876 Sed-Chr14:17592829 2.70E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0876 K14505 - csv:101216655 479.174