Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0876 | ATGGCTCTCCACGATGAACCCCAACTCCACCAGATTCAAACAGCCCACTCTTTGGCTCTTGATTCCCTCTTCTCTGAAGAACTCTCCTGCCATGAAGATTTGGGCGCAAATGGGGCCGATGAAGACGAAGATACCCATTACTGGGAAACTCTGAGAATCCAAAATGACCCACTTATGGAGGATGATGATCTTGAGTTGTTGCGGTCTCTCATTTCAAAACAAGAGCTGCCCCATTTTTGCTACGATGGGTTTCTTATTCAAGCTCGGAATGAAGCATTGTCTTGGATTTTTAGAGTCAAAGATCAGTGCTGTTTCTCTGGTTTGACCTTTCTTCTTGCTGTTAATTACTTTGATAGATTTGTTTCAAATGTGAGGTTTCAGAGGGATAAGCCATGGATGAGTCAGCTTGTTGCTGTTGCTTGCCTCTCCTTGGCTGCCAAAGTGGAGGAAACCCATGTTCCTCTTCTCCTGGACCTTCAAGTGGTGGAGTCCAAGTTTTTGTTTGAAGCCAAGACCATTCAAAGAATGGAGCTGTTGGTGTTGTCAGCCCTTCAATGGAAAATGCATCCTGTTACCCCTTTTTCCTTTTTTCATCTCATTATCAGGAGGTTGCCTTTGAAGAACCATATGCTTTGGGAGCTTCTTGGGAGGTTTCAGAGTCATCTCCTTTCTATCATAGCTGATCATAAATTCTTGTGCTACCTGCCTTCTGTCTTGGCCACTGCAACCATATTGCATATCATTAATGAGATGGAGCCATATAATTTCTTGGAATACCAGAATGAGCTTCGCTGTGTACTTAAAATTAATAAGAAACACCTAGATGAATGCTACAAGCTCATCATTGATTCACGGGGCAGTCATGGCAATCCTCAAAATCCTATGAACAAAAGCAAGCCAATGTGTGGACCATGCAGTCCTTGCGATGTTATGGACGGATACTTCATCTCCGATTCCTCGAATGATTCGTGGCAAATGGTACCATCTATCTCACCCTAG | 999 | 43.54 | MALHDEPQLHQIQTAHSLALDSLFSEELSCHEDLGANGADEDEDTHYWETLRIQNDPLMEDDDLELLRSLISKQELPHFCYDGFLIQARNEALSWIFRVKDQCCFSGLTFLLAVNYFDRFVSNVRFQRDKPWMSQLVAVACLSLAAKVEETHVPLLLDLQVVESKFLFEAKTIQRMELLVLSALQWKMHPVTPFSFFHLIIRRLPLKNHMLWELLGRFQSHLLSIIADHKFLCYLPSVLATATILHIINEMEPYNFLEYQNELRCVLKINKKHLDECYKLIIDSRGSHGNPQNPMNKSKPMCGPCSPCDVMDGYFISDSSNDSWQMVPSISP | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 17592829 | 17594832 | + | Sed0010556.1 | Sed14g0876 | 736594 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0876 | 332 | CDD | CYCLIN_AtCycD-like_rpt1 | 88 | 186 | - | - | |
Sed14g0876 | 332 | Gene3D | - | 190 | 279 | - | - | |
Sed14g0876 | 332 | ProSitePatterns | Cyclins signature. | 89 | 120 | IPR048258 | - | |
Sed14g0876 | 332 | SMART | Cyclin_C_2 | 191 | 308 | IPR004367 | - | |
Sed14g0876 | 332 | FunFam | D6-type cyclin | 72 | 189 | - | - | |
Sed14g0876 | 332 | Gene3D | - | 87 | 189 | - | - | |
Sed14g0876 | 332 | PANTHER | CYCLINS | 47 | 272 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed14g0876 | 332 | Pfam | Cyclin, N-terminal domain | 87 | 188 | IPR006671 | - | |
Sed14g0876 | 332 | SMART | cyclin_7 | 94 | 182 | IPR013763 | - | |
Sed14g0876 | 332 | SUPERFAMILY | Cyclin-like | 60 | 189 | IPR036915 | - | |
Sed14g0876 | 332 | Pfam | Cyclin, C-terminal domain | 191 | 285 | IPR004367 | - | |
Sed14g0876 | 332 | CDD | CYCLIN_AtCycD-like_rpt2 | 191 | 281 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0667 | Sed-Chr10:4578775 | Sed14g0876 | Sed-Chr14:17592829 | 1.80E-76 | dispersed | |
Sed10g0668 | Sed-Chr10:4578775 | Sed14g0876 | Sed-Chr14:17592829 | 1.80E-76 | dispersed | |
Sed13g0477 | Sed-Chr13:3252165 | Sed14g0876 | Sed-Chr14:17592829 | 1.50E-61 | dispersed | |
Sed13g1782 | Sed-Chr13:22857081 | Sed14g0876 | Sed-Chr14:17592829 | 1.60E-39 | dispersed | |
Sed14g0525 | Sed-Chr14:5238658 | Sed14g0876 | Sed-Chr14:17592829 | 1.80E-19 | dispersed | |
Sed14g0876 | Sed-Chr14:17592829 | Sed14g0996 | Sed-Chr14:19366486 | 2.40E-34 | dispersed | |
Sed10g0666 | Sed-Chr10:4578775 | Sed14g0876 | Sed-Chr14:17592829 | 1.20E-118 | wgd | |
Sed13g1781 | Sed-Chr13:22857081 | Sed14g0876 | Sed-Chr14:17592829 | 2.70E-53 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0876 | K14505 | - | csv:101216655 | 479.174 |