Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0906 ATGTTGCAATTCACCGAGGCGACCCCGGTCTATGAGATGTCGATGACTAATACGACCGGCCCGTTTCGGAGGCACCCATGGTCCGGATTGTTTCCTTGTTCCTCCAAGGCTCTTGGAAGTTGTTTGGGTGACGCCAATTGCATGGAGCAGCTACTGGTTCACTGCGCCAACGCCATTGAATCCAACGACGCAACCCTCGCCCAACAAATCCTTTGGGTTCTTAATAACATCGCCCCGCCCGACGGGGACTCGAACCAACGCCTCACCTCCGCTTTCCTCCGCGCTCTTATCACACGTGCCACCAACACCGGCACCTGTAAGATCCTCGCTGCCATCTCCTCCTCCTCCATTACCACCCACACCTTCTCCCTCATGGACTTCGCTGCCTTCGTCGACTTGACCCCCTGGCATCGCTTTGGCTTCACTGCCGCCAATGCTGCCATCCTTGACGCTATCGACGGCTACTCCTCCGTCCATGTCGTTGACTTCAGCCTGATGCATTGCATGCAAATCCCCACTCTCATCGACGCCATTGCTTCTCGGTTTGAGATCCCCCCGATACTCAAACTCACGACCGTCGTTGCTGCTGCCGTAGACCACGCGCCGCCGCCCATGCTAGACCTGTCGTACGATGAACTGGGTGCGAAATTGGTGAACTTCGCCAGGTCTAAAAACGTGAGTATGGAATTTAGAGTGGTCCCCTCTAGCTATGCAGACGGTTTTGCGAATTTAGTGGAACAAATCCGAGTGCAGCATCTGATTTACGGACACGAAAATAGTGAGGCGTTGGTTTTGAACTGTCAGATGATGCTCCATTACATCCCTGACGAAACGCTCAACCCATCTCCCAATTTCGACATGTCGTCTTCCATCCGATCCATGTTTCTCAAGGCGATCCGTAGCTTAGACCCAACGATTGTGATTCTAGTGGACGAAGACGCTGATTTCACGTCGGGAAAATTAGTGGGGCGGTTGAGATCGGCGTTTAATTACCTCTGGATTCCATACGACTCAATGGATTCATTTCTTCCAAGGAACAGCAAGCAAAGGGAGTGGTACGAGGCCCACATTTGTTGGAAGATTGAGAATGTGATTGCCCACGAAGGGGTTCAGAGAGTGGAGAGATTGGAGCCGAAAGGGCGGTGGGCTCAGCGGATGGTGAACTCCAAATTCCGAGGAGTTTCGTTCGGAGACGACGCCATTTCGGAGGTGAAGACGATGCTGGACGAGCATGCGGCGGGATGGGGGTCGAAGAAGGACGACGACCACCTCCTCCTCACATGGAAAGGCCACGATGTCGTTTTTGCCTCTGCTTGGGTACCTTGCTAA 1329 53.5 MLQFTEATPVYEMSMTNTTGPFRRHPWSGLFPCSSKALGSCLGDANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALITRATNTGTCKILAAISSSSITTHTFSLMDFAAFVDLTPWHRFGFTAANAAILDAIDGYSSVHVVDFSLMHCMQIPTLIDAIASRFEIPPILKLTTVVAAAVDHAPPPMLDLSYDELGAKLVNFARSKNVSMEFRVVPSSYADGFANLVEQIRVQHLIYGHENSEALVLNCQMMLHYIPDETLNPSPNFDMSSSIRSMFLKAIRSLDPTIVILVDEDADFTSGKLVGRLRSAFNYLWIPYDSMDSFLPRNSKQREWYEAHICWKIENVIAHEGVQRVERLEPKGRWAQRMVNSKFRGVSFGDDAISEVKTMLDEHAAGWGSKKDDDHLLLTWKGHDVVFASAWVPC 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 18007399 18009054 - Sed0008727.1 Sed14g0906 736624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0906 442 ProSiteProfiles GRAS family profile. 39 440 IPR005202 -
Sed14g0906 442 Pfam GRAS domain family 48 439 IPR005202 -
Sed14g0906 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 439 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0460 Sed-Chr1:3513089 Sed14g0906 Sed-Chr14:18007399 4.70E-42 transposed
Sed05g1993 Sed-Chr5:33236675 Sed14g0906 Sed-Chr14:18007399 2.40E-95 transposed
Sed09g0401 Sed-Chr9:3830446 Sed14g0906 Sed-Chr14:18007399 8.10E-41 transposed
Sed10g0719 Sed-Chr10:5020101 Sed14g0906 Sed-Chr14:18007399 7.50E-45 transposed
Sed10g0703 Sed-Chr10:4915195 Sed14g0906 Sed-Chr14:18007399 6.00E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40591 PF03514 GRAS 2.40E-92 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0906 - - - 0.0