Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0948 ATGAATAATATCAATGACAACAACTGCAACTGGCTAGGTTTCTCTTCTTCTTCCTCTGTCTCCCCTTCACTTCATCCAAATTATTTTCACTCTAACAACTATGCCATTTGCTATGGCCTTGATGCACAACAACATCAAAATAATGCCTTTTATTCACCACTCAAATCCCATCCTTCAATTTCTTCATTGGAATCTCTCAACACCCAACACCCTCAAGTTTTGAGTAACTCCACAACTCCAAAGCTAGAGGATTTCTTTGGTGGTGCAACAATGGGGTCCCATCATTATGAAAATAATGACAGGGAAGCAGCTATGGCTCTCAGCCTAGACAGTATATTTTGCCATCAAAACCCCAACAACAACAACAACAACAACCAACCCTTTTCACATTTTTCATCATTGCAAGAGAGTGAGATTTCTGGTATGAAGAATTGGGGTTCTGCAACTGCTAATAATGGTTTGTTTGAGCAAAAAATGGTGAGTTCCATGGCTGAAAATGGTGCCATGAATGCAATGGTTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAACTCTCAGTCAAGCTGTGTTACAGTCTCACAGCATGTTTCCCCTAAAATGCCTGACTGTTCTGCTAATGATACAAAGAAAAGAGGACATGAGAAGTTGGATCAAAATCAGAATCAGAAGCAAATTGTTCATAGAAAGTCTTTGGATACTTTTGGTCAAAGAACCTCTCAGTATAGAGGGGTTACAAGACACAGATGGACTGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGTAGGAAGGGAAGGCAAGTGTACCTAGGAGGTTATGATATGGAAGAAAAAGCAGCCAGATCTTATGATCTTGCGGCACTCAAGTATTGGGGACCCTCCACACACATTAACTTTCCTTTAGAAAACTATCCTAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTTGCTCACTTGAGAAGGAGAAGCAGCGGGTTCTCGAGGGGGGCTTCGATTTACCGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCGCGGATTGGTCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGATTGAATGCGGTTACTAATTTCGACATCACGAGATACGACGTGGACCGGATCATCGAAAGTAACACCCTCCTTAGTGGTGATCTAGCAAAGAGAAAGCAGCAGCCAGAGGTTGATAATGAATCTCTTGGACAAAGCCTTCCCACTCACAACAGCATTGCAGAAGCCATGCCTTTACCCTCACAAAGTAGTCCAAGTGAATCAGAATGGAGGATGGCTCTTTATCAGTCTTCCCAGCAGCTCGTTCCGAAACCTCGAGTGATGACCGATGATGGATCGCAACTGGGAGTCGAAGACTCTGGAAAGATGGGAGCTCATTTCTCCAATTCATCTTCAATGGTTACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACGAGCCTTTCGATGGTATTCGGAATGCCACAATCGATATCGAGGCCATTTGCTGCCCCGGGAAGTAATATGAACTCCTCATGGATTGCATCTGCCCAGCAGTTGAGGGCAACAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCTTGGACTGATACTTGA 1737 43.75 MNNINDNNCNWLGFSSSSSVSPSLHPNYFHSNNYAICYGLDAQQHQNNAFYSPLKSHPSISSLESLNTQHPQVLSNSTTPKLEDFFGGATMGSHHYENNDREAAMALSLDSIFCHQNPNNNNNNNQPFSHFSSLQESEISGMKNWGSATANNGLFEQKMVSSMAENGAMNAMVYGDLQSLSLSMTMSPNSQSSCVTVSQHVSPKMPDCSANDTKKRGHEKLDQNQNQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARSYDLAALKYWGPSTHINFPLENYPKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDITRYDVDRIIESNTLLSGDLAKRKQQPEVDNESLGQSLPTHNSIAEAMPLPSQSSPSESEWRMALYQSSQQLVPKPRVMTDDGSQLGVEDSGKMGAHFSNSSSMVTSCSLSSSREESPDKTSLSMVFGMPQSISRPFAAPGSNMNSSWIASAQQLRATNCMSQLPVFAAWTDT 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 18604434 18608509 + Sed0003498.1 Sed14g0948 736666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0948 578 MobiDBLite consensus disorder prediction 201 225 - -
Sed14g0948 578 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 181 458 - -
Sed14g0948 578 SUPERFAMILY DNA-binding domain 346 406 IPR016177 GO:0003677(InterPro)
Sed14g0948 578 CDD AP2 244 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 MobiDBLite consensus disorder prediction 209 225 - -
Sed14g0948 578 SUPERFAMILY DNA-binding domain 244 313 IPR016177 GO:0003677(InterPro)
Sed14g0948 578 ProSiteProfiles AP2/ERF domain profile. 245 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 PRINTS Ethylene responsive element binding protein signature 387 407 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 CDD AP2 346 407 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 FunFam AP2-like ethylene-responsive transcription factor 346 407 - -
Sed14g0948 578 Pfam AP2 domain 245 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 Pfam AP2 domain 348 397 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 Gene3D AP2/ERF domain 244 313 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 Gene3D AP2/ERF domain 347 407 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 ProSiteProfiles AP2/ERF domain profile. 347 405 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 SMART rav1_2 245 317 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 SMART rav1_2 347 411 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g0948 578 FunFam AP2-like ethylene-responsive transcription factor ANT 244 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1151 Sed-Chr10:16090429 Sed14g0948 Sed-Chr14:18604434 1.40E-131 dispersed
Sed10g1152 Sed-Chr10:16090429 Sed14g0948 Sed-Chr14:18604434 2.40E-124 dispersed
Sed13g1073 Sed-Chr13:9313707 Sed14g0948 Sed-Chr14:18604434 1.00E-89 dispersed
Sed13g1074 Sed-Chr13:9313707 Sed14g0948 Sed-Chr14:18604434 1.00E-89 dispersed
Sed14g0860 Sed-Chr14:17108621 Sed14g0948 Sed-Chr14:18604434 3.70E-43 dispersed
Sed14g0861 Sed-Chr14:17108621 Sed14g0948 Sed-Chr14:18604434 2.20E-35 dispersed
Sed14g0948 Sed-Chr14:18604434 Sed04g1638 Sed-Chr4:31088982 9.60E-07 dispersed
Sed10g0753 Sed-Chr10:5206626 Sed14g0948 Sed-Chr14:18604434 5.50E-249 wgd
Sed13g1830 Sed-Chr13:23227047 Sed14g0948 Sed-Chr14:18604434 2.10E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40602 PF00847 AP2 6.60E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0948 K09285 - csv:101203323 883.634