Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0950 ATGCACAGATTTTACCGAAGATCCATTTCGATCTTCAACAACAAATCTGCTCAAACACTTCTCACAAAATCCAACAACCCATTAACATCATTGCTCCAAAAATCGCACTTGTCCCACCACAGTGGATTCGGCCCTGTTCGCCTGACAGCACCACCCCAGGATTCCACCGCCGATGGCTCAGCCGACGAGTTTTCCGGCGACGTCGAAAAGGTGTACAGAATTCTAAGGAAATTCCACACCAGGGTTCCGAAACTCGAGCTTGCTCTGCAGGAATCCGGCGTCGTTTTGCGCTCTGGTCTACCGGAGCGTGTTTTAAGCCGCTGCGGCGACGCCGGAAACTTGGGTTACCGGTTCTTCGTTTGGGCTTCGAAGCAACCGGGTTATAGACATAGTTATGAGGTTTATAAAGCTATGATTAAGACATTGGGGAAGATGAGACAGTTTGGAGTTGTGTGGGCGTTGATTGAGGAAATGAGAAAAGAGAATCCTTATATGTTGACTCCTGAAGTTTTTATTGTTTTGATGAGGAGGTTTGCTTCTGCTAGAATGGTGAAGAAAGCAGTCGAGGTGCTCGATGAAATGCCGAAGTATGGGTGCGAGCCGGATGAATTCGTGTTTGGGTGTCTTCTTGATGCTTTGTGCAAGAATGGTAGTGTTAAAGAAGCAGCTTCTTTATTTGAGGATATGAGAGTTCGGTTTAATCCGAGTTTGAGGCATTTCACTTCTTTGTTGTATGGTTGGTGCCGAGAAGGCAAGATTTTGGAGGCTAAGCATGTATTGGTTCAGATAAAGGAAGCAGGGTTTGAACCTGACATTGTTGTTTATAACAATTTGCTTGGTGGGTATGCTCAAGCGCGGAAAATGCGGGATGCTTTTGATCTTTTGGAGGAGATGAGGAAAGTGAACTGCGGCCCGAATGCCGCGTCTTATACAATTTTGATTCAGGCTTTCTGTAAACAGGAAAAGATGGATGAGGCAATGCGTATTTTCGTCGAGATGCAAGGGAATGGATGCGAGGCAGATGTTGTGACTTATACAACTCTGATAAGTGGATTTTGTAAGTGGGGAAACACGGATAGAGCTTATGAGATCTTAGATAATATGATTCAGAAAGGATATGATCCTAGTCAGTTGAGTTATTTGTGTATAATGTTGGCACACGAAAAGAAGGAAGAGCTGGAAGAGTGTATGGAACTCATGAAAGAAATGAGGAAGATTGGTTGCTTACCAGACATTAACATCTATAATACAGTGATAAGGTTTGTATGCAAGTTGGGGGAGCTGAAAGAAGCCGTTCGACTTTGGGGTGAAATGGAAACTGGTGGGCTTAATCCAAGTCTTGACACATATATTCTGATGGTTCACGGGTTTCTTAGTCAAGGTTGTCTAATTGAAGCTTGTGATTACTTCAAAGAAATGGTTGAAAGAGGCTTTTTATCTGCTCCACAGTATGGTACTTTGAAGGAGTTAACAAATGCTCTATTGAGAGCTCAAAAGCTTGAAATGGCAAAAAACATGTGGAGTTGCATCACTTCTAAAGGATGTGAACTTAACGTCAGTGCTTGGACAATTTGGATTCATGCACTTTTTTCAAATGGACATGTGAAGGAGGCTTGTTCGTATTGCTTGGACATGATGGATGCAGAGCTAATGCCACAGCCGGACACTTTTGCGAAGCTAATGCGTGGCCTGAAGAAACTTTACCATAGACAACTAGCTGTAGAGATCACAGAGAAGGTGAGGAAGATGGCTGCAGATAGGGAAATCACTTTCAAGATGTACAAGAGACGTGGGGAGAGAGATTTGAAAGAGAAAATCAAGGCCAAAACAGATGGAAGGAAAAGGAGAGCACGTAGACGCCAATGGACTGGAGTGCACAAGCGAACTAAAACCCTGTAA 1899 43.71 MHRFYRRSISIFNNKSAQTLLTKSNNPLTSLLQKSHLSHHSGFGPVRLTAPPQDSTADGSADEFSGDVEKVYRILRKFHTRVPKLELALQESGVVLRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGVVWALIEEMRKENPYMLTPEVFIVLMRRFASARMVKKAVEVLDEMPKYGCEPDEFVFGCLLDALCKNGSVKEAASLFEDMRVRFNPSLRHFTSLLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQARKMRDAFDLLEEMRKVNCGPNAASYTILIQAFCKQEKMDEAMRIFVEMQGNGCEADVVTYTTLISGFCKWGNTDRAYEILDNMIQKGYDPSQLSYLCIMLAHEKKEELEECMELMKEMRKIGCLPDINIYNTVIRFVCKLGELKEAVRLWGEMETGGLNPSLDTYILMVHGFLSQGCLIEACDYFKEMVERGFLSAPQYGTLKELTNALLRAQKLEMAKNMWSCITSKGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDAELMPQPDTFAKLMRGLKKLYHRQLAVEITEKVRKMAADREITFKMYKRRGERDLKEKIKAKTDGRKRRARRRQWTGVHKRTKTL 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 18627980 18631089 + Sed0020730.1 Sed14g0950 736668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0950 632 Pfam PPR repeat 336 368 IPR002885 -
Sed14g0950 632 Pfam PPR repeat 198 230 IPR002885 -
Sed14g0950 632 Gene3D Tetratricopeptide repeat domain 383 483 IPR011990 GO:0005515(InterPro)
Sed14g0950 632 Pfam PPR repeat 521 547 IPR002885 -
Sed14g0950 632 Pfam PPR repeat 239 268 IPR002885 -
Sed14g0950 632 Pfam PPR repeat 134 162 IPR002885 -
Sed14g0950 632 Pfam PPR repeat 379 408 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 273 307 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 240 272 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 343 376 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 449 478 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 521 550 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 205 231 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 414 446 IPR002885 -
Sed14g0950 632 NCBIfam pentatricopeptide repeat 171 203 IPR002885 -
Sed14g0950 632 MobiDBLite consensus disorder prediction 609 632 - -
Sed14g0950 632 MobiDBLite consensus disorder prediction 43 62 - -
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Sed14g0950 632 Gene3D Tetratricopeptide repeat domain 232 300 IPR011990 GO:0005515(InterPro)
Sed14g0950 632 Gene3D Tetratricopeptide repeat domain 301 371 IPR011990 GO:0005515(InterPro)
Sed14g0950 632 Gene3D Tetratricopeptide repeat domain 102 231 IPR011990 GO:0005515(InterPro)
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Sed14g0950 632 SUPERFAMILY HCP-like 220 410 - -
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Sed14g0950 632 Pfam PPR repeat family 270 319 IPR002885 -
Sed14g0950 632 Pfam PPR repeat family 410 457 IPR002885 -
Sed14g0950 632 Coils Coil 386 406 - -
Sed14g0950 632 MobiDBLite consensus disorder prediction 605 632 - -
Sed14g0950 632 PANTHER OS01G0228400 PROTEIN 103 279 - -
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Sed14g0950 632 Gene3D Tetratricopeptide repeat domain 484 631 IPR011990 GO:0005515(InterPro)
Sed14g0950 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0950 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2949 Sed-Chr1:25737724 Sed14g0950 Sed-Chr14:18627980 4.70E-10 dispersed
Sed01g3081 Sed-Chr1:41444431 Sed14g0950 Sed-Chr14:18627980 2.70E-31 dispersed
Sed01g3082 Sed-Chr1:41444431 Sed14g0950 Sed-Chr14:18627980 2.70E-31 dispersed
Sed11g0808 Sed-Chr11:17389905 Sed14g0950 Sed-Chr14:18627980 1.30E-18 dispersed
Sed12g0627 Sed-Chr12:3752296 Sed14g0950 Sed-Chr14:18627980 1.90E-09 dispersed
Sed12g0628 Sed-Chr12:3752296 Sed14g0950 Sed-Chr14:18627980 1.90E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013953 1 0 1 0 1 1 1 0 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 1 0 22