Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0964 ATGAAATCCTCCATTCGATTATTAATCCCCCACCAGCCACCACCCATTTCCCCCATTCCCAAATCCCCCTTCTTAAAAACCCCCCTAAATTGCTCTCCAAATCCCCAAAACTTTCACTCACAAAATACCCAGATGGGATTTGATGAATTTTCCAACACAGGTCTTCTCCTAGGCTTGGGATTGACCCTCCCCACCAAACCGGCCGATCTTTCCCACAAACCCAAAAAACCCGCCCGTCTGTTCTGCTTCGCCGCCGAATCCGAACCCTCCTTAACGTTGGGCCTGTCCACGGCGGAAACGGCGGCTTGTTCAGGCGGCCGAGTGAAGCGCGAAAGGGAGGTTTCAGGCGAGGATGTGGACGAAGAGAAAGGCTGTTCTCGTGTGAGCGATGAAGAGGAAGATGGGTCTAATTCCAGGAAAAAACTTAGGCTTACCAAACAACAATCTGCCCTTTTGGAAGAGAGCTTCAAACTTCACAGCACTCTTAACCCTAAGGAAAAACAAGCTTTAGCCAGAGAGTTGAATCTTCGGGCTCGCCAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACAAAGCTAAAGCAAACGGAAGTGGATTGTGAGTTTTTAAAGAGATGCTGCGAAACATTAACGGATGAAAACAGGAGATTGCAAAAAGAGCTGCAGGAACTAAAAGCCCTGAAATTAGCGCCGCCCCTTTTCATGCAAATGCCGGCGGCGACGCTCTCCATTTGCCCCTCCTGCGACCGGATGGGCGGCGGCGCCACCGCCGGCAACGGCGATCTGAAATCCAAGCCTCTGTTTTACAAGCCCTTCACCAATCCCTCTGCTGCTTGCTGA 843 50.89 MKSSIRLLIPHQPPPISPIPKSPFLKTPLNCSPNPQNFHSQNTQMGFDEFSNTGLLLGLGLTLPTKPADLSHKPKKPARLFCFAAESEPSLTLGLSTAETAACSGGRVKREREVSGEDVDEEKGCSRVSDEEEDGSNSRKKLRLTKQQSALLEESFKLHSTLNPKEKQALARELNLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAPPLFMQMPAATLSICPSCDRMGGGATAGNGDLKSKPLFYKPFTNPSAAC 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 18805674 18807787 + Sed0015717.1 Sed14g0964 736682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0964 280 MobiDBLite consensus disorder prediction 106 141 - -
Sed14g0964 280 Pfam Homeobox associated leucine zipper 195 229 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g0964 280 Gene3D - 131 200 - -
Sed14g0964 280 SUPERFAMILY Homeodomain-like 131 196 IPR009057 -
Sed14g0964 280 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed14g0964 280 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677(InterPro)
Sed14g0964 280 Pfam Homeodomain 139 193 IPR001356 GO:0003677(InterPro)
Sed14g0964 280 CDD homeodomain 139 196 IPR001356 GO:0003677(InterPro)
Sed14g0964 280 MobiDBLite consensus disorder prediction 106 142 - -
Sed14g0964 280 SMART HOX_1 137 199 IPR001356 GO:0003677(InterPro)
Sed14g0964 280 Coils Coil 201 231 - -
Sed14g0964 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 55 258 IPR050762 -
Sed14g0964 280 SMART halz 195 238 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2155 Sed-Chr12:32126683 Sed14g0964 Sed-Chr14:18805674 4.50E-39 dispersed
Sed13g1053 Sed-Chr13:8970251 Sed14g0964 Sed-Chr14:18805674 1.90E-74 dispersed
Sed14g0964 Sed-Chr14:18805674 Sed14g0965 Sed-Chr14:18805674 1.10E-101 tandem
Sed10g0764 Sed-Chr10:5393669 Sed14g0964 Sed-Chr14:18805674 3.30E-92 wgd
Sed13g1841 Sed-Chr13:23345957 Sed14g0964 Sed-Chr14:18805674 1.50E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40604 PF00046 Homeodomain 1.50E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0964 K09338 - csv:101218782 336.265