Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0987 ATGAAGAGACAGAGCAGCTCAGATTCCTTGGGCGCTTTGGTTTCCATCGGTCCCACTTCAGAGGATTTTGAGTCGATGTTAGACGAAGAACAGAGCCATGTTGGGGAGAAGAAAAGGAGATTGGCTGCAGATCAAGTGAAGGCGTTGGAGAAAACATTCGAGATTGAAAACAAGCTCGAACCAGAGAGAAAATTGAAGCTTGCTCAAGAACTTGGCCTGCAACCGAGACAAGTTGCAGTTTGGTTTCAAAATCGCAGAGCTCGATGGAGAACTAAGAACCTCGAAAGAGATTATGGTGTTCTTAAAGCCAATTATGATTCTCTTAAACTTAATTTTGATGCCCTTCAACACAACAATGATGCTCTGCTCAAAGAGATAAAGGAATTGAAATCGAAGCTTCATGACGAGAAGATGGAGCAGAATTTGTCGGAATCGGAGAATTTACTAATTAAACAAACTCATAATCATTTTCTCGGCGACTATTTCGATGACCTCAACTACGAGAGCTTCAAATCCGCCGCCGCCGATGACGGCGGCGACGAACAGAGAGTTGAAGTGTCGTTTCCTGATTTTAAAGATGGGTCATCAGACAGCGATTCGAGCGCCGTGTTAAACGACGACAGCAGCCCAAACGCCGTCGTTTCATCGGCGGCAACCGGAATTCTTCAAACCCACCACCCGATTCCGTCGTCTCCGGCGGCGTCTATGAACTGCTTCTCGTTTCAAAAACAATTTGTGAAAATTGAAGAGTATAATTTCTTCAGCGGAGAAGAAACCTGCAATTTGTTCTCCGATGAAGAAGCCCCCTCTTTGCCCTGGTACAGTCCTGATCAGTGGAACTGA 843 45.43 MKRQSSSDSLGALVSIGPTSEDFESMLDEEQSHVGEKKRRLAADQVKALEKTFEIENKLEPERKLKLAQELGLQPRQVAVWFQNRRARWRTKNLERDYGVLKANYDSLKLNFDALQHNNDALLKEIKELKSKLHDEKMEQNLSESENLLIKQTHNHFLGDYFDDLNYESFKSAAADDGGDEQRVEVSFPDFKDGSSDSDSSAVLNDDSSPNAVVSSAATGILQTHHPIPSSPAASMNCFSFQKQFVKIEEYNFFSGEETCNLFSDEEAPSLPWYSPDQWN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19203953 19205745 - Sed0019382.1 Sed14g0987 736705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0987 280 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed14g0987 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 254 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed14g0987 280 MobiDBLite consensus disorder prediction 1 39 - -
Sed14g0987 280 MobiDBLite consensus disorder prediction 193 209 - -
Sed14g0987 280 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677(InterPro)
Sed14g0987 280 Coils Coil 105 139 - -
Sed14g0987 280 CDD homeodomain 37 93 IPR001356 GO:0003677(InterPro)
Sed14g0987 280 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677(InterPro)
Sed14g0987 280 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677(InterPro)
Sed14g0987 280 MobiDBLite consensus disorder prediction 189 209 - -
Sed14g0987 280 Gene3D - 32 99 - -
Sed14g0987 280 FunFam Homeobox-leucine zipper protein HOX13 40 89 - -
Sed14g0987 280 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g0987 280 Pfam Homeodomain 37 90 IPR001356 GO:0003677(InterPro)
Sed14g0987 280 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Sed14g0987 280 SMART HOX_1 35 96 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1992 Sed-Chr11:34074679 Sed14g0987 Sed-Chr14:19203953 2.90E-25 dispersed
Sed13g1002 Sed-Chr13:7917387 Sed14g0987 Sed-Chr14:19203953 1.40E-16 dispersed
Sed13g2151 Sed-Chr13:26103988 Sed14g0987 Sed-Chr14:19203953 4.00E-24 dispersed
Sed14g0343 Sed-Chr14:3518025 Sed14g0987 Sed-Chr14:19203953 6.00E-15 dispersed
Sed10g0840 Sed-Chr10:6194141 Sed14g0987 Sed-Chr14:19203953 6.80E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40610 PF00046 Homeodomain 4.90E-16 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0987 K09338 - csv:101205742 381.719