Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g0987 | ATGAAGAGACAGAGCAGCTCAGATTCCTTGGGCGCTTTGGTTTCCATCGGTCCCACTTCAGAGGATTTTGAGTCGATGTTAGACGAAGAACAGAGCCATGTTGGGGAGAAGAAAAGGAGATTGGCTGCAGATCAAGTGAAGGCGTTGGAGAAAACATTCGAGATTGAAAACAAGCTCGAACCAGAGAGAAAATTGAAGCTTGCTCAAGAACTTGGCCTGCAACCGAGACAAGTTGCAGTTTGGTTTCAAAATCGCAGAGCTCGATGGAGAACTAAGAACCTCGAAAGAGATTATGGTGTTCTTAAAGCCAATTATGATTCTCTTAAACTTAATTTTGATGCCCTTCAACACAACAATGATGCTCTGCTCAAAGAGATAAAGGAATTGAAATCGAAGCTTCATGACGAGAAGATGGAGCAGAATTTGTCGGAATCGGAGAATTTACTAATTAAACAAACTCATAATCATTTTCTCGGCGACTATTTCGATGACCTCAACTACGAGAGCTTCAAATCCGCCGCCGCCGATGACGGCGGCGACGAACAGAGAGTTGAAGTGTCGTTTCCTGATTTTAAAGATGGGTCATCAGACAGCGATTCGAGCGCCGTGTTAAACGACGACAGCAGCCCAAACGCCGTCGTTTCATCGGCGGCAACCGGAATTCTTCAAACCCACCACCCGATTCCGTCGTCTCCGGCGGCGTCTATGAACTGCTTCTCGTTTCAAAAACAATTTGTGAAAATTGAAGAGTATAATTTCTTCAGCGGAGAAGAAACCTGCAATTTGTTCTCCGATGAAGAAGCCCCCTCTTTGCCCTGGTACAGTCCTGATCAGTGGAACTGA | 843 | 45.43 | MKRQSSSDSLGALVSIGPTSEDFESMLDEEQSHVGEKKRRLAADQVKALEKTFEIENKLEPERKLKLAQELGLQPRQVAVWFQNRRARWRTKNLERDYGVLKANYDSLKLNFDALQHNNDALLKEIKELKSKLHDEKMEQNLSESENLLIKQTHNHFLGDYFDDLNYESFKSAAADDGGDEQRVEVSFPDFKDGSSDSDSSAVLNDDSSPNAVVSSAATGILQTHHPIPSSPAASMNCFSFQKQFVKIEEYNFFSGEETCNLFSDEEAPSLPWYSPDQWN | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 19203953 | 19205745 | - | Sed0019382.1 | Sed14g0987 | 736705 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g0987 | 280 | ProSitePatterns | 'Homeobox' domain signature. | 67 | 90 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed14g0987 | 280 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 25 | 254 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Sed14g0987 | 280 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Sed14g0987 | 280 | MobiDBLite | consensus disorder prediction | 193 | 209 | - | - | |
Sed14g0987 | 280 | ProSiteProfiles | 'Homeobox' domain profile. | 32 | 92 | IPR001356 | GO:0003677(InterPro) | |
Sed14g0987 | 280 | Coils | Coil | 105 | 139 | - | - | |
Sed14g0987 | 280 | CDD | homeodomain | 37 | 93 | IPR001356 | GO:0003677(InterPro) | |
Sed14g0987 | 280 | PRINTS | Lambda-repressor HTH signature | 63 | 72 | IPR000047 | GO:0003677(InterPro) | |
Sed14g0987 | 280 | PRINTS | Lambda-repressor HTH signature | 72 | 88 | IPR000047 | GO:0003677(InterPro) | |
Sed14g0987 | 280 | MobiDBLite | consensus disorder prediction | 189 | 209 | - | - | |
Sed14g0987 | 280 | Gene3D | - | 32 | 99 | - | - | |
Sed14g0987 | 280 | FunFam | Homeobox-leucine zipper protein HOX13 | 40 | 89 | - | - | |
Sed14g0987 | 280 | Pfam | Homeobox associated leucine zipper | 92 | 133 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed14g0987 | 280 | Pfam | Homeodomain | 37 | 90 | IPR001356 | GO:0003677(InterPro) | |
Sed14g0987 | 280 | SUPERFAMILY | Homeodomain-like | 25 | 94 | IPR009057 | - | |
Sed14g0987 | 280 | SMART | HOX_1 | 35 | 96 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1992 | Sed-Chr11:34074679 | Sed14g0987 | Sed-Chr14:19203953 | 2.90E-25 | dispersed | |
Sed13g1002 | Sed-Chr13:7917387 | Sed14g0987 | Sed-Chr14:19203953 | 1.40E-16 | dispersed | |
Sed13g2151 | Sed-Chr13:26103988 | Sed14g0987 | Sed-Chr14:19203953 | 4.00E-24 | dispersed | |
Sed14g0343 | Sed-Chr14:3518025 | Sed14g0987 | Sed-Chr14:19203953 | 6.00E-15 | dispersed | |
Sed10g0840 | Sed-Chr10:6194141 | Sed14g0987 | Sed-Chr14:19203953 | 6.80E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40610 | PF00046 | Homeodomain | 4.90E-16 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g0987 | K09338 | - | csv:101205742 | 381.719 |