Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g0996 ATGGCTGATAGTTTATACTGTACAGAGAGCTCCAATACTTGTTTTGATTGTATTGCCACAAACAATGAGCTAATATCTCGGCCCCGCCGTAGAGCCCGAGACCCGAATGTTGACGGTTTCGGAGCCGAGAGTGAAGAGAGGATCAGAGAAATGGTTGAGAAAGAGATTCAGCATTTGCCTAGACATGATTATCTTAATAGAATGAGATGTGGGGATTTGGATTTGAAGTTTAGAAGAGAGGCTGTTGATTGGATTTGGAAGGCTCATGCTCATTACACCTTTGGACCTTTGAGTCTTTGTCTGTCATTGAACTATTTGGATCGTTTCCTCTCAGCATATCACATGCCTATGGATAAAAGCTGGATTGTGCAGCTGCTGTCAGTAGCTTGTATGTCTCTAGCAGCAAAAATGGAGGAAGCAGAAATGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACAATACAAAGAATGGAGCTTTTGGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCATTCATTGATTATTTTCTTAGTAAGATCACTGTTGAGCAGCATGTACCAAGGCCATCCTTGTTAAAATCTGGACAACTCATTCTGAACACAATTAAAGGCATTGACTTCTTGGAATTCAAGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGAAGAACTTCAAGCAACAGACATGAATAAAGAAATCCTTTCTTTTCCATACATTGAGAAAGAGAGAGTGACAAAGTGTATTGAACTGATCAAGGATTTTTCATTGATCAATAATGCATATGAAAATTCATTGGGTGGTGGTAATAATGGTGGTTCTTCAATTCCTCAAAGCCCTGTTGGAGTGTTGGATGCAGCTTGTTTCAGTTACAAAACAGAAGAATTTACTGCAGCTTCATGTGGTAATAATTCTTCTTATCATGACAGTCCAGACAGCAAGAGAAGGAGACAAAACAGACCATCATCAAATCATGATTCAAGTCCTGAAAAAGAGTGA 1044 39.46 MADSLYCTESSNTCFDCIATNNELISRPRRRARDPNVDGFGAESEERIREMVEKEIQHLPRHDYLNRMRCGDLDLKFRREAVDWIWKAHAHYTFGPLSLCLSLNYLDRFLSAYHMPMDKSWIVQLLSVACMSLAAKMEEAEMPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHVPRPSLLKSGQLILNTIKGIDFLEFKPSEIALAVAISISEELQATDMNKEILSFPYIEKERVTKCIELIKDFSLINNAYENSLGGGNNGGSSIPQSPVGVLDAACFSYKTEEFTAASCGNNSSYHDSPDSKRRRQNRPSSNHDSSPEKE 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19366486 19369357 - Sed0026894.1 Sed14g0996 736714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g0996 347 CDD CYCLIN_AtCycD-like_rpt1 78 175 - -
Sed14g0996 347 Pfam Cyclin, N-terminal domain 48 177 IPR006671 -
Sed14g0996 347 MobiDBLite consensus disorder prediction 324 347 - -
Sed14g0996 347 ProSitePatterns Cyclins signature. 78 109 IPR048258 -
Sed14g0996 347 MobiDBLite consensus disorder prediction 315 347 - -
Sed14g0996 347 Gene3D - 61 178 - -
Sed14g0996 347 FunFam D2/4-type cyclin 61 173 - -
Sed14g0996 347 CDD CYCLIN_AtCycD-like_rpt2 180 267 - -
Sed14g0996 347 SUPERFAMILY Cyclin-like 42 177 IPR036915 -
Sed14g0996 347 Gene3D - 49 266 - -
Sed14g0996 347 FunFam D6-type cyclin 174 265 - -
Sed14g0996 347 Pfam Cyclin, C-terminal domain 180 274 IPR004367 -
Sed14g0996 347 PANTHER CYCLINS 42 269 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed14g0996 347 SMART cyclin_7 83 171 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0425 Sed-Chr13:2798669 Sed14g0996 Sed-Chr14:19366486 8.50E-45 dispersed
Sed13g1781 Sed-Chr13:22857081 Sed14g0996 Sed-Chr14:19366486 1.00E-36 dispersed
Sed14g0876 Sed-Chr14:17592829 Sed14g0996 Sed-Chr14:19366486 2.40E-34 dispersed
Sed10g0826 Sed-Chr10:6040568 Sed14g0996 Sed-Chr14:19366486 1.60E-142 wgd
Sed14g0996 Sed-Chr14:19366486 Sed04g0187 Sed-Chr4:1317654 2.50E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g0996 K18810 - csv:101209378 515.768