Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1003 ATGACGAAGGAGAAGATCCAGATCAGGAAGATCGACAACGCGGCGGCGAGGCAGGTCACTTTCTCCAAACGCCGGAGAGGACTTTTTAAGAAAGCTAAAGAGCTGTCGGTTCTATGCGACGCCGATGTTGCCGTCGTTCTTTTCTCAGCCACCGGAAAACTTTTTGACTACTCCAGCTCAAGTATGAAGGGCATTATAGAAAGACAAAAGCTGCACTCTAAGAACCTTCAGAAATTGCAACAGCCATCCCTTGAACTACAGCTGGTTGAAGACAGCAATTTCACCCGATTAAATCAGGAGATTGCCGAGAAAACTCATCGGCTAAGGCAGATGAGGGGAGAGGAGCTTGAGTCGTTGAATATAGAAGAACTGCAGCAGCTGGAGAAGTTACTGGAGACTGGATTCAGCCGTGTGATGGAAACAAAGGGCGAAAGGATCATGAATGAGATCACTGTTCTTCAAAGAAAGGTTAAGTGTACCATCTTCAAACGAAAAAGAATATTTTTTCTTATAATTAAATTAGGCTATTCCTCAAATGGTATAGGAGAATCTATTGCAATCTATCTATAA 570 43.33 MTKEKIQIRKIDNAAARQVTFSKRRRGLFKKAKELSVLCDADVAVVLFSATGKLFDYSSSSMKGIIERQKLHSKNLQKLQQPSLELQLVEDSNFTRLNQEIAEKTHRLRQMRGEELESLNIEELQQLEKLLETGFSRVMETKGERIMNEITVLQRKVKCTIFKRKRIFFLIIKLGYSSNGIGESIAIYL 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19462453 19468211 + Sed0017033.2 Sed14g1003 736721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1003 189 Coils Coil 94 114 - -
Sed14g1003 189 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed14g1003 189 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed14g1003 189 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 150 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed14g1003 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1003 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1003 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1003 189 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1003 189 FunFam Transcription factor, MADS-box 13 83 - -
Sed14g1003 189 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1003 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1003 189 Pfam K-box region 92 158 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed14g1003 189 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1003 189 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0818 Sed-Chr10:5951273 Sed14g1003 Sed-Chr14:19462453 8.90E-65 dispersed
Sed13g0371 Sed-Chr13:2468492 Sed14g1003 Sed-Chr14:19462453 8.60E-38 dispersed
Sed14g1003 Sed-Chr14:19462453 Sed13g0384 Sed-Chr13:2566179 1.10E-25 dispersed
Sed14g1002 Sed-Chr14:19462453 Sed14g1003 Sed-Chr14:19462453 9.70E-77 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40613 PF01486 K-box 3.30E-12 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1003 - - - 0.0