Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1014 ATGTTGAAAAATGAATGGGGCACTACCATTTACCCTATTGTTCCCGGCCATGAAATCGTTGGCGAAGTAACAAAGGTTGGAAGCAAAGTAGAGAAATTCAAGGTTGGAGACAAAGTTGGCGTAGGTTGTATGGTCGGATCCTGTCGCTCCTGCGATAACTGTTCCAACGACCTTGAGAACTACTGCCCCAAAATGATTCTCACTTACTCTTCCAAATTTTTCGATGGGAGCGTAACCTACGGTGGCTACTCCGACTCCATGGTTGCTGACGAGCATTTCATCGTTCGCATTCCCGACGGCAGCCCTCTGCATGCTGTGGCTCCACTGCTGTGCGCCGGCGTCACGGTCTATAGCCCCTTGAGGTATTATGGACTTGACAAGCCTGGTATGCATATTGGTGTGGTTGGCCTTGGTGGGCTTGGTCATGTTGCTGTCAAATTTGCCAAGGCCTTTGGTGCTAAGGTTACTGTGATTAGTACATCCCCTAATAAGAAGGACGAGGCTATTACTAATCTTGGGGCTGATTCATTCTTGGTCAGCCGCGATCAAGACCAAATGCAGGCTGCTTGGGGGACGATGGATGGTATCATTGACACAGTCTCAGCTCTGCATCCCCTGCTTCCTTTGATATCTCTTATCAAACCACATGGAAAGCTTGTTATGCTTGGTATACCAGAGAAGCCACTAGAGGTCCCAGCCTTTGCTCTCATTGGGGGTAGGAAAACAGTGGCTGGTAGCTGCATTGGAGGGATGAAGGAAACACAGGAGATGATTGATTTTGCAGCCAAACACAATATAACTGCAGAAGTGGAGCTTATTCCGGTCACCGACGTCAACACCGCCATGGAACGGATGCTGAAACAAGATGTCAAGTATCGATTCGTTATCGACATTGCGAACACCTTGAAGCCTGACAACTAA 921 48.32 MLKNEWGTTIYPIVPGHEIVGEVTKVGSKVEKFKVGDKVGVGCMVGSCRSCDNCSNDLENYCPKMILTYSSKFFDGSVTYGGYSDSMVADEHFIVRIPDGSPLHAVAPLLCAGVTVYSPLRYYGLDKPGMHIGVVGLGGLGHVAVKFAKAFGAKVTVISTSPNKKDEAITNLGADSFLVSRDQDQMQAAWGTMDGIIDTVSALHPLLPLISLIKPHGKLVMLGIPEKPLEVPAFALIGGRKTVAGSCIGGMKETQEMIDFAAKHNITAEVELIPVTDVNTAMERMLKQDVKYRFVIDIANTLKPDN 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19661056 19663779 + Sed0021229.1 Sed14g1014 736732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1014 306 Pfam Zinc-binding dehydrogenase 139 262 IPR013149 -
Sed14g1014 306 Pfam Alcohol dehydrogenase GroES-like domain 5 99 IPR013154 -
Sed14g1014 306 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 16 30 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Sed14g1014 306 Gene3D - 112 268 - -
Sed14g1014 306 FunFam Cinnamyl alcohol dehydrogenase 112 268 - -
Sed14g1014 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 103 266 IPR036291 -
Sed14g1014 306 CDD CAD1 1 297 IPR047109 GO:0016616(InterPro)
Sed14g1014 306 PANTHER ALDEHYDE REDUCTASE 1 301 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Sed14g1014 306 SMART PKS_ER_names_mod 7 296 IPR020843 GO:0016491(InterPro)
Sed14g1014 306 SUPERFAMILY GroES-like 2 129 IPR011032 -
Sed14g1014 306 Gene3D - 1 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0043 Sed-Chr1:454981 Sed14g1014 Sed-Chr14:19661056 4.30E-119 dispersed
Sed13g2160 Sed-Chr13:26172324 Sed14g1014 Sed-Chr14:19661056 1.70E-99 dispersed
Sed14g1014 Sed-Chr14:19661056 Sed14g1015 Sed-Chr14:19661056 1.70E-167 tandem
Sed10g0805 Sed-Chr10:5827449 Sed14g1014 Sed-Chr14:19661056 2.00E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1014 K23232 - csv:101222715 539.65