Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1016 ATGGAGAACACAAGTAATGGAAAAAGACAACAGCTTCCATGGAATTGGAAGCTTCCATTCTCAACAATGGCGGCCCTTTTCTTCTTCTTCAGTTTGACGCTCGCCCAACCGCAACAACAAATACTAAGAAATTTGGTGAACAACGGATCAACGTTATCACCAGACGTAACGCTATGGCAGAATTATGGACAGGTGGCCATGAACAATGGCTTAGTTCGAGTCACTTTATCTCGTGCAGATGGCAATGTTATTGGCATAAAATACAATAATATGAATAACGTACTCGATTTTCACAATACATACCATAATAGAGGATACTGGGATGTAGTTTGGAACCGCCCAAATGCACGTGGTGGCCTTGACGGTCTAAGGTCAACAGAATTCAAAGTGATTCATGAAACCAGTGACAAAATAGAGATTTCATTCACAAAAACTTGGAATTCTTCGGACCGTTACTCGGTCCCTTTCAACGTAGACAAGAGGTTTATTCTGCGACGCGGAGATTCTGGATTCTACACATATGCAATATTTGAACGGCTGGATGGATGGCCACGAATTGACGTGGACGCGATCAGAGTCGTCTTCAAAGTCCTAAGAGACAAATTTAATTACATGGCGGTATCGGACGATAGACGGAGGATCATGCCAACGGACCGGGACCGCATGACCGGGCAGGCTCTGGCTTACAAGGAGGCGGTTCTGTTAACCCAACCCAGGAACCCGAACCTCAAAGGAGAGGTAGATGATAAGTACCAGTACTCGCAAGAGAATATGGAGAACAAGGTTCATGGATGGGTATCAAGGGACCCACACGTGGGGTTCTGGATGATCACAGCCAGTGATGAGTATCGTGCGGGCGGGCCCCTCAAGCAAGAACTCACTTCCCACGTTGGCCCCACAACTCTCGCCGTATTCACAAGTGACCATTACGTGGGCAAAGATATTTCGTTGAAATTCGGAGAGGGAGAAGCATGGAAGAAGGTTTACGGACCGGTCTTTGTATATCTGAACTCGGATCCGACCGGCACTCCCGGTTCACTATGGGAAGATGCTAAAAACCAGATGAAGAAAGAAACGAGGAAGTGGCCGTACAGCTTTGTCGAGTCCGAGGAATTTCCATCCAAAGACAAACGAGGAACCGTGACTGGTCGACTAATGGTTCGAGATAGATATGCTGAGAAGATTTTGATGTCTGCCAAATCTGCGTATGTGGGCCTTGCAGCTCCCGGTCAATTGGGGTCGTGGCAAAGGGAAAGCAAGGGATATCAATTTTGGACACGGGCAGACCACCAAGGATATTTCTCCATTCAAAACATAAGACCCGGAAACTACAGCCTATACGCATGGGCACCCGGCGTCATCGGCGATTACAAGTACGATAACGACATCACCGTCACGCCGACAAGCTCAACCAACCTGACCACACTAATCTACGAGCCTCCGAGACAAGGCCCAACTCTATGGGAGATCGGCATCCCAGACCGAAAAGCGGCCGAGTTCTACATACCCGATCCCAACCCTACCCACATAACCCGCCTCTACAACAACACCAAAGTCCAAACCCGAGATAAATTCCGACAATACGGACTATGGGAACGCTACGCCGAGTTATACCCCGACCGGGATTTGGTCTACAACGTCGAAACCGACAACTACCGCCGCAATTGGTTCTTTGCCCACGTGACGAGAGCCAACGGTCAAGGGAACTACCAAGCAACGACATGGCAGATTGTGTTTCGCCTTCATGGGCCCAAACAGACCGGGTTCTACACGCTCCGGTTGGCCTTGGCCGCGTCTTCCCAAGCAGTCGTCGATATCCGGTTCAATAACCCGTCGAGCCGTCGGCCGCATTTCACGACCGGGTACTGGAACTCGGGGAGAGATAACGCTATTGCACGACATGGAATTCATGGGCTTTATTTGTTGCTTAATTTTGAGGTTTCAAGTCGTTATTTGATTGAGGATGGAGAAAATATTATTTATCTTACACAGAGAAGAAATGCGGGGCCATTTTCAGGAGTATTATACGATTACATACGATTTGAAGGGGTACGGTAA 2058 48.3 MENTSNGKRQQLPWNWKLPFSTMAALFFFFSLTLAQPQQQILRNLVNNGSTLSPDVTLWQNYGQVAMNNGLVRVTLSRADGNVIGIKYNNMNNVLDFHNTYHNRGYWDVVWNRPNARGGLDGLRSTEFKVIHETSDKIEISFTKTWNSSDRYSVPFNVDKRFILRRGDSGFYTYAIFERLDGWPRIDVDAIRVVFKVLRDKFNYMAVSDDRRRIMPTDRDRMTGQALAYKEAVLLTQPRNPNLKGEVDDKYQYSQENMENKVHGWVSRDPHVGFWMITASDEYRAGGPLKQELTSHVGPTTLAVFTSDHYVGKDISLKFGEGEAWKKVYGPVFVYLNSDPTGTPGSLWEDAKNQMKKETRKWPYSFVESEEFPSKDKRGTVTGRLMVRDRYAEKILMSAKSAYVGLAAPGQLGSWQRESKGYQFWTRADHQGYFSIQNIRPGNYSLYAWAPGVIGDYKYDNDITVTPTSSTNLTTLIYEPPRQGPTLWEIGIPDRKAAEFYIPDPNPTHITRLYNNTKVQTRDKFRQYGLWERYAELYPDRDLVYNVETDNYRRNWFFAHVTRANGQGNYQATTWQIVFRLHGPKQTGFYTLRLALAASSQAVVDIRFNNPSSRRPHFTTGYWNSGRDNAIARHGIHGLYLLLNFEVSSRYLIEDGENIIYLTQRRNAGPFSGVLYDYIRFEGVR 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19664842 19673814 - Sed0000483.1 Sed14g1016 736734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1016 685 Pfam Polysaccharide lyase family 4, domain II 400 473 IPR029413 -
Sed14g1016 685 SUPERFAMILY Starch-binding domain-like 377 474 IPR013784 GO:0030246(InterPro)
Sed14g1016 685 Pfam Rhamnogalacturonate lyase family 54 247 IPR010325 -
Sed14g1016 685 SUPERFAMILY Galactose mutarotase-like 68 341 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Sed14g1016 685 Gene3D - 374 475 - -
Sed14g1016 685 SUPERFAMILY Galactose-binding domain-like 484 682 IPR008979 -
Sed14g1016 685 CDD RGL4_M 377 476 IPR029413 -
Sed14g1016 685 Gene3D - 56 320 IPR014718 GO:0030246(InterPro)
Sed14g1016 685 Gene3D - 484 681 - -
Sed14g1016 685 CDD RGL4_C 488 682 - -
Sed14g1016 685 CDD RGL4_N 64 347 - -
Sed14g1016 685 Pfam Polysaccharide lyase family 4, domain III 486 681 IPR029411 -
Sed14g1016 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 683 IPR051850 -
Sed14g1016 685 FunFam Rhamnogalacturonate lyase B 374 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1526 Sed-Chr13:20410113 Sed14g1016 Sed-Chr14:19664842 2.30E-173 dispersed
Sed13g1527 Sed-Chr13:20423355 Sed14g1016 Sed-Chr14:19664842 2.00E-207 dispersed
Sed14g1016 Sed-Chr14:19664842 Sed14g1343 Sed-Chr14:22277037 6.80E-161 dispersed
Sed10g0804 Sed-Chr10:5819657 Sed14g1016 Sed-Chr14:19664842 2.30E-305 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1016 K18195 - csv:101206696 946.036