Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g1016 | ATGGAGAACACAAGTAATGGAAAAAGACAACAGCTTCCATGGAATTGGAAGCTTCCATTCTCAACAATGGCGGCCCTTTTCTTCTTCTTCAGTTTGACGCTCGCCCAACCGCAACAACAAATACTAAGAAATTTGGTGAACAACGGATCAACGTTATCACCAGACGTAACGCTATGGCAGAATTATGGACAGGTGGCCATGAACAATGGCTTAGTTCGAGTCACTTTATCTCGTGCAGATGGCAATGTTATTGGCATAAAATACAATAATATGAATAACGTACTCGATTTTCACAATACATACCATAATAGAGGATACTGGGATGTAGTTTGGAACCGCCCAAATGCACGTGGTGGCCTTGACGGTCTAAGGTCAACAGAATTCAAAGTGATTCATGAAACCAGTGACAAAATAGAGATTTCATTCACAAAAACTTGGAATTCTTCGGACCGTTACTCGGTCCCTTTCAACGTAGACAAGAGGTTTATTCTGCGACGCGGAGATTCTGGATTCTACACATATGCAATATTTGAACGGCTGGATGGATGGCCACGAATTGACGTGGACGCGATCAGAGTCGTCTTCAAAGTCCTAAGAGACAAATTTAATTACATGGCGGTATCGGACGATAGACGGAGGATCATGCCAACGGACCGGGACCGCATGACCGGGCAGGCTCTGGCTTACAAGGAGGCGGTTCTGTTAACCCAACCCAGGAACCCGAACCTCAAAGGAGAGGTAGATGATAAGTACCAGTACTCGCAAGAGAATATGGAGAACAAGGTTCATGGATGGGTATCAAGGGACCCACACGTGGGGTTCTGGATGATCACAGCCAGTGATGAGTATCGTGCGGGCGGGCCCCTCAAGCAAGAACTCACTTCCCACGTTGGCCCCACAACTCTCGCCGTATTCACAAGTGACCATTACGTGGGCAAAGATATTTCGTTGAAATTCGGAGAGGGAGAAGCATGGAAGAAGGTTTACGGACCGGTCTTTGTATATCTGAACTCGGATCCGACCGGCACTCCCGGTTCACTATGGGAAGATGCTAAAAACCAGATGAAGAAAGAAACGAGGAAGTGGCCGTACAGCTTTGTCGAGTCCGAGGAATTTCCATCCAAAGACAAACGAGGAACCGTGACTGGTCGACTAATGGTTCGAGATAGATATGCTGAGAAGATTTTGATGTCTGCCAAATCTGCGTATGTGGGCCTTGCAGCTCCCGGTCAATTGGGGTCGTGGCAAAGGGAAAGCAAGGGATATCAATTTTGGACACGGGCAGACCACCAAGGATATTTCTCCATTCAAAACATAAGACCCGGAAACTACAGCCTATACGCATGGGCACCCGGCGTCATCGGCGATTACAAGTACGATAACGACATCACCGTCACGCCGACAAGCTCAACCAACCTGACCACACTAATCTACGAGCCTCCGAGACAAGGCCCAACTCTATGGGAGATCGGCATCCCAGACCGAAAAGCGGCCGAGTTCTACATACCCGATCCCAACCCTACCCACATAACCCGCCTCTACAACAACACCAAAGTCCAAACCCGAGATAAATTCCGACAATACGGACTATGGGAACGCTACGCCGAGTTATACCCCGACCGGGATTTGGTCTACAACGTCGAAACCGACAACTACCGCCGCAATTGGTTCTTTGCCCACGTGACGAGAGCCAACGGTCAAGGGAACTACCAAGCAACGACATGGCAGATTGTGTTTCGCCTTCATGGGCCCAAACAGACCGGGTTCTACACGCTCCGGTTGGCCTTGGCCGCGTCTTCCCAAGCAGTCGTCGATATCCGGTTCAATAACCCGTCGAGCCGTCGGCCGCATTTCACGACCGGGTACTGGAACTCGGGGAGAGATAACGCTATTGCACGACATGGAATTCATGGGCTTTATTTGTTGCTTAATTTTGAGGTTTCAAGTCGTTATTTGATTGAGGATGGAGAAAATATTATTTATCTTACACAGAGAAGAAATGCGGGGCCATTTTCAGGAGTATTATACGATTACATACGATTTGAAGGGGTACGGTAA | 2058 | 48.3 | MENTSNGKRQQLPWNWKLPFSTMAALFFFFSLTLAQPQQQILRNLVNNGSTLSPDVTLWQNYGQVAMNNGLVRVTLSRADGNVIGIKYNNMNNVLDFHNTYHNRGYWDVVWNRPNARGGLDGLRSTEFKVIHETSDKIEISFTKTWNSSDRYSVPFNVDKRFILRRGDSGFYTYAIFERLDGWPRIDVDAIRVVFKVLRDKFNYMAVSDDRRRIMPTDRDRMTGQALAYKEAVLLTQPRNPNLKGEVDDKYQYSQENMENKVHGWVSRDPHVGFWMITASDEYRAGGPLKQELTSHVGPTTLAVFTSDHYVGKDISLKFGEGEAWKKVYGPVFVYLNSDPTGTPGSLWEDAKNQMKKETRKWPYSFVESEEFPSKDKRGTVTGRLMVRDRYAEKILMSAKSAYVGLAAPGQLGSWQRESKGYQFWTRADHQGYFSIQNIRPGNYSLYAWAPGVIGDYKYDNDITVTPTSSTNLTTLIYEPPRQGPTLWEIGIPDRKAAEFYIPDPNPTHITRLYNNTKVQTRDKFRQYGLWERYAELYPDRDLVYNVETDNYRRNWFFAHVTRANGQGNYQATTWQIVFRLHGPKQTGFYTLRLALAASSQAVVDIRFNNPSSRRPHFTTGYWNSGRDNAIARHGIHGLYLLLNFEVSSRYLIEDGENIIYLTQRRNAGPFSGVLYDYIRFEGVR | 685 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 19664842 | 19673814 | - | Sed0000483.1 | Sed14g1016 | 736734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g1016 | 685 | Pfam | Polysaccharide lyase family 4, domain II | 400 | 473 | IPR029413 | - | |
Sed14g1016 | 685 | SUPERFAMILY | Starch-binding domain-like | 377 | 474 | IPR013784 | GO:0030246(InterPro) | |
Sed14g1016 | 685 | Pfam | Rhamnogalacturonate lyase family | 54 | 247 | IPR010325 | - | |
Sed14g1016 | 685 | SUPERFAMILY | Galactose mutarotase-like | 68 | 341 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Sed14g1016 | 685 | Gene3D | - | 374 | 475 | - | - | |
Sed14g1016 | 685 | SUPERFAMILY | Galactose-binding domain-like | 484 | 682 | IPR008979 | - | |
Sed14g1016 | 685 | CDD | RGL4_M | 377 | 476 | IPR029413 | - | |
Sed14g1016 | 685 | Gene3D | - | 56 | 320 | IPR014718 | GO:0030246(InterPro) | |
Sed14g1016 | 685 | Gene3D | - | 484 | 681 | - | - | |
Sed14g1016 | 685 | CDD | RGL4_C | 488 | 682 | - | - | |
Sed14g1016 | 685 | CDD | RGL4_N | 64 | 347 | - | - | |
Sed14g1016 | 685 | Pfam | Polysaccharide lyase family 4, domain III | 486 | 681 | IPR029411 | - | |
Sed14g1016 | 685 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 52 | 683 | IPR051850 | - | |
Sed14g1016 | 685 | FunFam | Rhamnogalacturonate lyase B | 374 | 473 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed13g1526 | Sed-Chr13:20410113 | Sed14g1016 | Sed-Chr14:19664842 | 2.30E-173 | dispersed | |
Sed13g1527 | Sed-Chr13:20423355 | Sed14g1016 | Sed-Chr14:19664842 | 2.00E-207 | dispersed | |
Sed14g1016 | Sed-Chr14:19664842 | Sed14g1343 | Sed-Chr14:22277037 | 6.80E-161 | dispersed | |
Sed10g0804 | Sed-Chr10:5819657 | Sed14g1016 | Sed-Chr14:19664842 | 2.30E-305 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g1016 | K18195 | - | csv:101206696 | 946.036 |