Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1017 ATGGGTCGAGGAAAGATTGTGATAAGAAGGATTGATAATTTAGCAAGCAGACAAGTGACTTTCTCCAAGAGAAGAAATGGACTTATTAAAAAAGCTAAAGAGCTTGCAATTCTTTGTGATGCTGAAATTGGACTCATCATTTTTTCCAGCTCTGGCAAATTCTATGATTTTTCAAACACTAGTGTAGAGTCAGTAATTGAGAAATATAACAAATGGAAGGAGGAAGATGAATTGCTGTTGAATCCAGCTTCAGATGTCAAGCAACTACTAAACCTCCAAGAGAATAATCGAAAATTAATGGGAGAGCAACTCTATGGTTTATCAACCAAAGACCTAAATAATCTTGAGAATCAACTGGAATTCAGTTTACAATGTATCCGGATTAAAAAGGAACAGATACTAAATGATGAAATAAAAGAACTGAGCCGAAAGGAAATTATGATGCACCAAGAAAATATAGAGCTAAGCAACAAAGTGAACCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGGCATGACTCGAGATCAGAGATGAACATCTCCACCGGAAACGCCTCGGTTCCTTATGGTATAATCAGCGCCGCCGGCCCAGCCACAAGCAACGCCTTGCGTATGTTACATCTTCAGCTCAACTCGCCCGAGCAACGCCCAAACATCGATCGATTATAA 681 38.62 MGRGKIVIRRIDNLASRQVTFSKRRNGLIKKAKELAILCDAEIGLIIFSSSGKFYDFSNTSVESVIEKYNKWKEEDELLLNPASDVKQLLNLQENNRKLMGEQLYGLSTKDLNNLENQLEFSLQCIRIKKEQILNDEIKELSRKEIMMHQENIELSNKVNLYCQENMELHRKVYGHDSRSEMNISTGNASVPYGIISAAGPATSNALRMLHLQLNSPEQRPNIDRL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19692247 19699515 + Sed0000564.1 Sed14g1017 736735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1017 226 ProSiteProfiles K-box domain profile. 75 165 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed14g1017 226 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed14g1017 226 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed14g1017 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 Pfam K-box region 87 159 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed14g1017 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 Gene3D - 15 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1017 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0384 Sed-Chr13:2566179 Sed14g1017 Sed-Chr14:19692247 3.60E-45 dispersed
Sed14g1017 Sed-Chr14:19692247 Sed10g0194 Sed-Chr10:1137633 2.00E-29 dispersed
Sed10g0818 Sed-Chr10:5951273 Sed14g1017 Sed-Chr14:19692247 8.00E-26 wgd
Sed10g0803 Sed-Chr10:5806069 Sed14g1017 Sed-Chr14:19692247 3.30E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40614 PF01486 K-box 1.60E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1017 K09264 - csv:101206453 341.658