Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g1019 | ATGGAACTCAGCCAACATGGTTTCTTAGAGGAGCTTTTAGCTTCAACGCCTTGGAATTCCTCCTATTCAAATGGGTTCAATGATTTGCTCCAAAATGGCTGGAATTTCAGCTCCTTTGATGAAAACCCCCAAATGGGTTCCTCTGTTTTCCCCTGTTTTCCTCCAACAGATACTGATTTTATCTTTTCCGACCAGCAGATCTACAGCAATTTCCTCGAAGGGTTTGCGATGTCGGAGCTGGATTCTTCATCGTACGTTAAAACCCTCGAAACCCCACCGTTTGTTTCGGGGGAAGAAGTGAGCGAAAGGAACAGGGGAGTTTCGGCCATGGATGAGGAAGAAGTTGGGTTAAATGTGTGTAAAGTTGAAATGGAGCAAATGGGTGGGGTTTTAAGCAATGAATCTAAGATGGGTGTGGCTGAATTGGGGAAAAGGAGCAGTAAAGGTAAGAAGATTGAAGGTCAGCCCTCGAAGAATTTAATGGCGGAGAGGAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCGATGCTCAGAGCTATCGTTCCTAAGATAAGCAAGATGGATAGGACGTCTATACTTGGAGACACGATCGATTATGTGAAAGAACTGATTGAAAGAATCAATAACTTGAAAGAAGAAGATGTTGGTTTAGATTCAAATCATGTGAGCTTAAATGGGATCTTAAAGGAAAGGAAGTCCAATGATGTTCTAGTGAGAAATTCTCCTAAGTTCGAGGTTGAAAGGAAGGAGAGGGAGACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCTACTGTCAACACATTAGAAGCATTGGGCCTTGAGATTCAACACTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCATGCTTCTTGTTCAGAGGGAAGTGGTGAGAAAGCAATGGCAAGTTCTGATGATATAAAGGATGCATTGTTCAGAAATGCAGGTTATGGAGGGAAGTGCTTGTAG | 984 | 42.99 | MELSQHGFLEELLASTPWNSSYSNGFNDLLQNGWNFSSFDENPQMGSSVFPCFPPTDTDFIFSDQQIYSNFLEGFAMSELDSSSYVKTLETPPFVSGEEVSERNRGVSAMDEEEVGLNVCKVEMEQMGGVLSNESKMGVAELGKRSSKGKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEDVGLDSNHVSLNGILKERKSNDVLVRNSPKFEVERKERETRIDICCATRPGLLLSTVNTLEALGLEIQHCVISCFNDFSMHASCSEGSGEKAMASSDDIKDALFRNAGYGGKCL | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 19770612 | 19774423 | + | Sed0013534.1 | Sed14g1019 | 736737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g1019 | 327 | MobiDBLite | consensus disorder prediction | 140 | 159 | - | - | |
Sed14g1019 | 327 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 157 | 219 | IPR036638 | GO:0046983(InterPro) | |
Sed14g1019 | 327 | SMART | finulus | 160 | 209 | IPR011598 | GO:0046983(InterPro) | |
Sed14g1019 | 327 | Pfam | Helix-loop-helix DNA-binding domain | 161 | 203 | IPR011598 | GO:0046983(InterPro) | |
Sed14g1019 | 327 | Gene3D | - | 148 | 219 | IPR036638 | GO:0046983(InterPro) | |
Sed14g1019 | 327 | MobiDBLite | consensus disorder prediction | 141 | 159 | - | - | |
Sed14g1019 | 327 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 203 | IPR011598 | GO:0046983(InterPro) | |
Sed14g1019 | 327 | CDD | ACT_UUR-ACR-like | 253 | 293 | - | - | |
Sed14g1019 | 327 | Coils | Coil | 200 | 220 | - | - | |
Sed14g1019 | 327 | Pfam | Plant bHLH transcription factor, ACT-like domain | 245 | 316 | IPR054502 | - | |
Sed14g1019 | 327 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 132 | 322 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2407 | Sed-Chr8:37177970 | Sed14g1019 | Sed-Chr14:19770612 | 1.30E-31 | dispersed | |
Sed10g0797 | Sed-Chr10:5701655 | Sed14g1019 | Sed-Chr14:19770612 | 6.60E-138 | dispersed | |
Sed12g2174 | Sed-Chr12:32307592 | Sed14g1019 | Sed-Chr14:19770612 | 6.60E-11 | dispersed | |
Sed14g1019 | Sed-Chr14:19770612 | Sed11g0861 | Sed-Chr11:20499478 | 1.60E-06 | dispersed | |
Sed10g0779 | Sed-Chr10:5524980 | Sed14g1019 | Sed-Chr14:19770612 | 3.90E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40615 | PF00010 | HLH | 2.00E-09 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g1019 | - | - | - | 0.0 |