Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1019 ATGGAACTCAGCCAACATGGTTTCTTAGAGGAGCTTTTAGCTTCAACGCCTTGGAATTCCTCCTATTCAAATGGGTTCAATGATTTGCTCCAAAATGGCTGGAATTTCAGCTCCTTTGATGAAAACCCCCAAATGGGTTCCTCTGTTTTCCCCTGTTTTCCTCCAACAGATACTGATTTTATCTTTTCCGACCAGCAGATCTACAGCAATTTCCTCGAAGGGTTTGCGATGTCGGAGCTGGATTCTTCATCGTACGTTAAAACCCTCGAAACCCCACCGTTTGTTTCGGGGGAAGAAGTGAGCGAAAGGAACAGGGGAGTTTCGGCCATGGATGAGGAAGAAGTTGGGTTAAATGTGTGTAAAGTTGAAATGGAGCAAATGGGTGGGGTTTTAAGCAATGAATCTAAGATGGGTGTGGCTGAATTGGGGAAAAGGAGCAGTAAAGGTAAGAAGATTGAAGGTCAGCCCTCGAAGAATTTAATGGCGGAGAGGAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCGATGCTCAGAGCTATCGTTCCTAAGATAAGCAAGATGGATAGGACGTCTATACTTGGAGACACGATCGATTATGTGAAAGAACTGATTGAAAGAATCAATAACTTGAAAGAAGAAGATGTTGGTTTAGATTCAAATCATGTGAGCTTAAATGGGATCTTAAAGGAAAGGAAGTCCAATGATGTTCTAGTGAGAAATTCTCCTAAGTTCGAGGTTGAAAGGAAGGAGAGGGAGACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCTACTGTCAACACATTAGAAGCATTGGGCCTTGAGATTCAACACTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCATGCTTCTTGTTCAGAGGGAAGTGGTGAGAAAGCAATGGCAAGTTCTGATGATATAAAGGATGCATTGTTCAGAAATGCAGGTTATGGAGGGAAGTGCTTGTAG 984 42.99 MELSQHGFLEELLASTPWNSSYSNGFNDLLQNGWNFSSFDENPQMGSSVFPCFPPTDTDFIFSDQQIYSNFLEGFAMSELDSSSYVKTLETPPFVSGEEVSERNRGVSAMDEEEVGLNVCKVEMEQMGGVLSNESKMGVAELGKRSSKGKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEDVGLDSNHVSLNGILKERKSNDVLVRNSPKFEVERKERETRIDICCATRPGLLLSTVNTLEALGLEIQHCVISCFNDFSMHASCSEGSGEKAMASSDDIKDALFRNAGYGGKCL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19770612 19774423 + Sed0013534.1 Sed14g1019 736737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1019 327 MobiDBLite consensus disorder prediction 140 159 - -
Sed14g1019 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 219 IPR036638 GO:0046983(InterPro)
Sed14g1019 327 SMART finulus 160 209 IPR011598 GO:0046983(InterPro)
Sed14g1019 327 Pfam Helix-loop-helix DNA-binding domain 161 203 IPR011598 GO:0046983(InterPro)
Sed14g1019 327 Gene3D - 148 219 IPR036638 GO:0046983(InterPro)
Sed14g1019 327 MobiDBLite consensus disorder prediction 141 159 - -
Sed14g1019 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983(InterPro)
Sed14g1019 327 CDD ACT_UUR-ACR-like 253 293 - -
Sed14g1019 327 Coils Coil 200 220 - -
Sed14g1019 327 Pfam Plant bHLH transcription factor, ACT-like domain 245 316 IPR054502 -
Sed14g1019 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 132 322 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2407 Sed-Chr8:37177970 Sed14g1019 Sed-Chr14:19770612 1.30E-31 dispersed
Sed10g0797 Sed-Chr10:5701655 Sed14g1019 Sed-Chr14:19770612 6.60E-138 dispersed
Sed12g2174 Sed-Chr12:32307592 Sed14g1019 Sed-Chr14:19770612 6.60E-11 dispersed
Sed14g1019 Sed-Chr14:19770612 Sed11g0861 Sed-Chr11:20499478 1.60E-06 dispersed
Sed10g0779 Sed-Chr10:5524980 Sed14g1019 Sed-Chr14:19770612 3.90E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40615 PF00010 HLH 2.00E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1019 - - - 0.0