Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1024 ATGGCTCTCTCCAACGCCGCCGCTCTCTCCTCCTCCAAATCCATCTTCAATCCCCTTAACGACCCCAAATCTCACCGACCCATTTCCTTTTTTGCCCCTCCCAAGGCCGGACGCCGCCGAATCGCCGCCGTCCATGCGGCTGAGCCGGCCAATGACAAGGTCGTTGCCGAGACCCCTTTGAAGAAAGTGGCGGCGCCGCCGCCGCCGTTGAGCAACGAGAAATGGGGTTTGGAGAGCTGGAAATCGAAGAAGGCTTTGCAGCTGCCGGAGTACCCGGATCAGGCGGCTCTTGAGTCTGTTCTTAATACCATTGAGTCCTTTCCGCCCATTGTGTTTGCTGGTGAGGCTAGGAGCCTTGAGGAGCGGCTGGCTCAGGCGGCTATGGGGAATGCCTTTTTGTTGCAAGGTGGGGATTGTGCTGAGAGTTTCAAGGAGTTTAGTGCTAATAATATTAGGGATACTTTCAGGATTCTGCTTCAGATGGGTGTTGTTCTTATGTTTGGTGGTCAAATGCCTGTTATTAAGGTTGGAAGAATGGCTGGGCAATTTGCAAAGCCTAGGTCAGACCCTATGGAGGTGAAGGATGGAGTAAGTCTTCCAAGCTACAAGGGGGACAACATTAATGGTGATGATTTCACTGAGAAGTCAAGAATTCCAGACCCAGAGAGGATGATTAGAGCTTACACTCAATCTGCTGCAACTCTCAATCTTCTTAGGTCCTTTGCTACTGGAGGATATGCTGCAATGCAGAGGGTCACTCAATGGAATCTTGATTTTGCGGAAAACAGTGAGCAGGCAGATAGGTATCACGAACTTGCTCGCCGTGTCGATGAGACCCTTGGATTCATGGCTGCTGCAGGACTCACTGTCGACCATCCTATCATGACAACAACCGAGTTCTGGACCTCTCACGAGTGTTTGCTCTTGCCTTACGAGCAATCACTTACCAGACTCGACTCAACATCTGGTCGTTACTACGACTGCTCAGCTCACATGCTTTGGGTTGGAGAGCGTACCCGGCAACTCGATGGTGCCCACGTAGAATTCCTTAGAGGGGTTGCTAACCCTCTTGGAATTAAGGTGAGCGACAAAATGGATCCAAATGAGATGGTTAAACTTATTAATATCCTCAACCCTGATAACAAACCAGGAAGGATAACTATCATTGTAAGAATGGGTGCTGAAAACCAGAGAGTAAAGCTTCCCCATTTGATTAGAGCCGTACAAAAGGCAAGGCTAGTTGTGACATGGGTCTGTGATCCAATGCATGGAAACACCATTAAGGCACCCTGTGGTCTGAAGACACGCCCATTCGATGCTATTCTGAATGAGGTCCGAGCTTTCTTTGACGTGCACGAGCAAGAAGGGAGCCATGCTGGAGGAATTCATTTGGAAATGACTGGACAGAATGTGACAGAATGCATTGGAGGATCCCGAACCGTAACCTTCGACGACTTGTCCTCGAGATACCACACACACTGTGACCCAAGGCTGAATGCTTCTCAGTCTCTTGAGCTTGCTTTCATCATCGCAGAGAGGCTTAGGAAGAAGAGGATTGGAAAGCAGAACCCTCTTTCCCTAAACTTCTTGTAA 1593 49.47 MALSNAAALSSSKSIFNPLNDPKSHRPISFFAPPKAGRRRIAAVHAAEPANDKVVAETPLKKVAAPPPPLSNEKWGLESWKSKKALQLPEYPDQAALESVLNTIESFPPIVFAGEARSLEERLAQAAMGNAFLLQGGDCAESFKEFSANNIRDTFRILLQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDPMEVKDGVSLPSYKGDNINGDDFTEKSRIPDPERMIRAYTQSAATLNLLRSFATGGYAAMQRVTQWNLDFAENSEQADRYHELARRVDETLGFMAAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGRYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNEMVKLINILNPDNKPGRITIIVRMGAENQRVKLPHLIRAVQKARLVVTWVCDPMHGNTIKAPCGLKTRPFDAILNEVRAFFDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKKRIGKQNPLSLNFL 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 19841525 19845354 - Sed0006287.1 Sed14g1024 736742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1024 530 MobiDBLite consensus disorder prediction 1 31 - -
Sed14g1024 530 Pfam Class-II DAHP synthetase family 75 511 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Sed14g1024 530 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 264 516 - -
Sed14g1024 530 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 41 522 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Sed14g1024 530 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 75 518 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Sed14g1024 530 SUPERFAMILY Aldolase 70 515 - -
Sed14g1024 530 Gene3D Aldolase class I 257 516 IPR013785 -
Sed14g1024 530 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1024 K01626 - - csv:101207177 949.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0152 Sed-Chr4:1046858 Sed14g1024 Sed-Chr14:19841525 1.30E-236 dispersed
Sed06g0760 Sed-Chr6:8032479 Sed14g1024 Sed-Chr14:19841525 5.00E-225 dispersed
Sed10g0847 Sed-Chr10:6313779 Sed14g1024 Sed-Chr14:19841525 1.30E-276 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g436 . Blo12g00710 . Bda03g00487 Bpe02g00116 Bpe04g00441 . Bma01g02607 . Cmo12g00127 . . . Car12g00152 Sed14g1024 . Cpe07g00140 Bhi04g00773 Tan02g2405 Cmetu03g1046 . Hepe10g0485 . Lcy13g1551 Cla08g01120 Cam08g1576 Cec08g1146 Cco08g1273 Clacu08g1277 . Cre08g1058 Cone4ag1327 Cone7ag1268 . . . . . Cme03g01855 . . Bda11g00773 . . . . . . . . Cma12g00165 . . . . . . . . . . . . . . . . . . . Lsi08g00976 Csa02g02160 Chy03g01357 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000443 4 4 4 4 4 4 5 4 4 4 4 3 5 4 3 4 4 5 5 4 4 3 4 4 3 4 3 5 4 1 117