Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1054 ATGTCGGCGGCTTTAGGTTTTTATAAAGGAATTTCAGCCCCGGTTTACTCTTCGGATCCTTTAAACGAAGAATTAATGAAAGCACTTGAACCTTTTTTAAAAAGTGCTATTCCAACCTCTTCTTCTTCTTCATTTTCTCAAGGTTTTTCAGAAATTGAACAAATGGGTATTGAGCAATCAGGCCCAATTGGGCTAAACAATCTCACTTCTTCTCAAATTCTCCAAATTCAAGCTCAAATCCAACTACCCATTTCTTCATTTGAATCTCAAATTTCATCTCAATTCAATAACTTTCTTGCTCCAAAATCCATCCCAATGAAGCAGATTGGATCTTTACCTAAGCCGAGTAAATTGTACCGGGGAGTTCGGCAGCGGCATTGGGGAAAATGGGTGGCTGAAATCAGACTCCCCAAGAACAGAACCAGGCTCTGGCTTGGCACTTTCGACACCGCCGAGAACGCGGCGTTGGCCTATGATAAAGCTGCTTACAAGCTCCGAGGGGAATTTGCTCGGCTCAATTTCCCCCATCTCATACAACAATTTGGGGATTTCAATCCACTTCACGCTTCTGTGGATGCAAAACTTGAAGCAATTTGTGAGAGCTTGAAACAGGGGAAAACAGAGGAAACAGAGCAGCTCTGTTCTGGTGATGAACAAAAGCTAATTCCAATTCCAACTCCACCTTCGTCTTCGTCTTCTTCGCTGTCGTCGTCGTCGTCGTGTTCTCGGGTGGAAGATTTACCAACTGGGTCTTCCCCTGAATGCAGCATAAGCTTCTTGGATTTCTCTGATTCTCAATGGGATGAAAATGAATCCTTTTTTTGTTCGGAAAAGTTTTCATCTGTTGAAATTGATTGGGCGGCTCTGAATCAGCTGGCCGAATCAGACTCTTATTGCTTGATATTAAAAGGATTTAGTGGACACTCACGCATGTTTGAGCCCCTGGATCTTATCGAAGGAGGGAGTGGTTTGATGATTTCATTGTTTGGAGGAAATTCAGTTCAACACTATCATCACGATTTAAATCTCTAA 1032 42.54 MSAALGFYKGISAPVYSSDPLNEELMKALEPFLKSAIPTSSSSSFSQGFSEIEQMGIEQSGPIGLNNLTSSQILQIQAQIQLPISSFESQISSQFNNFLAPKSIPMKQIGSLPKPSKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAENAALAYDKAAYKLRGEFARLNFPHLIQQFGDFNPLHASVDAKLEAICESLKQGKTEETEQLCSGDEQKLIPIPTPPSSSSSSLSSSSSCSRVEDLPTGSSPECSISFLDFSDSQWDENESFFCSEKFSSVEIDWAALNQLAESDSYCLILKGFSGHSRMFEPLDLIEGGSGLMISLFGGNSVQHYHHDLNL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20095632 20100045 - Sed0020020.1 Sed14g1054 736772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1054 343 CDD AP2 117 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1054 343 Pfam AP2 domain 118 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1054 343 SMART rav1_2 118 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1054 343 MobiDBLite consensus disorder prediction 209 251 - -
Sed14g1054 343 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1054 343 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 20 289 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed14g1054 343 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Sed14g1054 343 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1054 343 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1054 343 MobiDBLite consensus disorder prediction 224 251 - -
Sed14g1054 343 Gene3D AP2/ERF domain 118 176 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1054 343 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2065 Sed-Chr4:35017164 Sed14g1054 Sed-Chr14:20095632 4.60E-27 dispersed
Sed07g1551 Sed-Chr7:12249871 Sed14g1054 Sed-Chr14:20095632 1.30E-28 dispersed
Sed12g1433 Sed-Chr12:11968969 Sed14g1054 Sed-Chr14:20095632 7.80E-49 dispersed
Sed13g0793 Sed-Chr13:5879075 Sed14g1054 Sed-Chr14:20095632 1.60E-29 dispersed
Sed14g0610 Sed-Chr14:6154357 Sed14g1054 Sed-Chr14:20095632 1.60E-16 dispersed
Sed14g1054 Sed-Chr14:20095632 Sed05g2782 Sed-Chr5:39100404 2.50E-18 dispersed
Sed10g0864 Sed-Chr10:6490632 Sed14g1054 Sed-Chr14:20095632 9.70E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40617 PF00847 AP2 2.80E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1054 K09286 - csv:101211347 353.984