Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g1054 | ATGTCGGCGGCTTTAGGTTTTTATAAAGGAATTTCAGCCCCGGTTTACTCTTCGGATCCTTTAAACGAAGAATTAATGAAAGCACTTGAACCTTTTTTAAAAAGTGCTATTCCAACCTCTTCTTCTTCTTCATTTTCTCAAGGTTTTTCAGAAATTGAACAAATGGGTATTGAGCAATCAGGCCCAATTGGGCTAAACAATCTCACTTCTTCTCAAATTCTCCAAATTCAAGCTCAAATCCAACTACCCATTTCTTCATTTGAATCTCAAATTTCATCTCAATTCAATAACTTTCTTGCTCCAAAATCCATCCCAATGAAGCAGATTGGATCTTTACCTAAGCCGAGTAAATTGTACCGGGGAGTTCGGCAGCGGCATTGGGGAAAATGGGTGGCTGAAATCAGACTCCCCAAGAACAGAACCAGGCTCTGGCTTGGCACTTTCGACACCGCCGAGAACGCGGCGTTGGCCTATGATAAAGCTGCTTACAAGCTCCGAGGGGAATTTGCTCGGCTCAATTTCCCCCATCTCATACAACAATTTGGGGATTTCAATCCACTTCACGCTTCTGTGGATGCAAAACTTGAAGCAATTTGTGAGAGCTTGAAACAGGGGAAAACAGAGGAAACAGAGCAGCTCTGTTCTGGTGATGAACAAAAGCTAATTCCAATTCCAACTCCACCTTCGTCTTCGTCTTCTTCGCTGTCGTCGTCGTCGTCGTGTTCTCGGGTGGAAGATTTACCAACTGGGTCTTCCCCTGAATGCAGCATAAGCTTCTTGGATTTCTCTGATTCTCAATGGGATGAAAATGAATCCTTTTTTTGTTCGGAAAAGTTTTCATCTGTTGAAATTGATTGGGCGGCTCTGAATCAGCTGGCCGAATCAGACTCTTATTGCTTGATATTAAAAGGATTTAGTGGACACTCACGCATGTTTGAGCCCCTGGATCTTATCGAAGGAGGGAGTGGTTTGATGATTTCATTGTTTGGAGGAAATTCAGTTCAACACTATCATCACGATTTAAATCTCTAA | 1032 | 42.54 | MSAALGFYKGISAPVYSSDPLNEELMKALEPFLKSAIPTSSSSSFSQGFSEIEQMGIEQSGPIGLNNLTSSQILQIQAQIQLPISSFESQISSQFNNFLAPKSIPMKQIGSLPKPSKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAENAALAYDKAAYKLRGEFARLNFPHLIQQFGDFNPLHASVDAKLEAICESLKQGKTEETEQLCSGDEQKLIPIPTPPSSSSSSLSSSSSCSRVEDLPTGSSPECSISFLDFSDSQWDENESFFCSEKFSSVEIDWAALNQLAESDSYCLILKGFSGHSRMFEPLDLIEGGSGLMISLFGGNSVQHYHHDLNL | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 20095632 | 20100045 | - | Sed0020020.1 | Sed14g1054 | 736772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g1054 | 343 | CDD | AP2 | 117 | 177 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1054 | 343 | Pfam | AP2 domain | 118 | 167 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1054 | 343 | SMART | rav1_2 | 118 | 181 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1054 | 343 | MobiDBLite | consensus disorder prediction | 209 | 251 | - | - | |
Sed14g1054 | 343 | ProSiteProfiles | AP2/ERF domain profile. | 118 | 175 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1054 | 343 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 20 | 289 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Sed14g1054 | 343 | FunFam | Ethylene-responsive transcription factor 2 | 117 | 176 | - | - | |
Sed14g1054 | 343 | PRINTS | Ethylene responsive element binding protein signature | 141 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1054 | 343 | PRINTS | Ethylene responsive element binding protein signature | 119 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1054 | 343 | MobiDBLite | consensus disorder prediction | 224 | 251 | - | - | |
Sed14g1054 | 343 | Gene3D | AP2/ERF domain | 118 | 176 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1054 | 343 | SUPERFAMILY | DNA-binding domain | 118 | 176 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2065 | Sed-Chr4:35017164 | Sed14g1054 | Sed-Chr14:20095632 | 4.60E-27 | dispersed | |
Sed07g1551 | Sed-Chr7:12249871 | Sed14g1054 | Sed-Chr14:20095632 | 1.30E-28 | dispersed | |
Sed12g1433 | Sed-Chr12:11968969 | Sed14g1054 | Sed-Chr14:20095632 | 7.80E-49 | dispersed | |
Sed13g0793 | Sed-Chr13:5879075 | Sed14g1054 | Sed-Chr14:20095632 | 1.60E-29 | dispersed | |
Sed14g0610 | Sed-Chr14:6154357 | Sed14g1054 | Sed-Chr14:20095632 | 1.60E-16 | dispersed | |
Sed14g1054 | Sed-Chr14:20095632 | Sed05g2782 | Sed-Chr5:39100404 | 2.50E-18 | dispersed | |
Sed10g0864 | Sed-Chr10:6490632 | Sed14g1054 | Sed-Chr14:20095632 | 9.70E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40617 | PF00847 | AP2 | 2.80E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g1054 | K09286 | - | csv:101211347 | 353.984 |