Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1078 ATGGCGGGTCAGCCGTCAGATTCTTCCCCTCTTATTCCACCGGCGCCGATCAGCGAGCCCAGTGAGATCGACCTCGAATCCGGCCAAGGGGACCAAATTCAGTGTAGAATTTGCCTCGAAACCGATGGTAGGGATTTTATTGCCCCTTGCAAATGCAAAGGGTCATCAAAGTATGTTCATCGAGAATGTCTTGATCAATGGCGAGCTGTGAAGGAAGGGTTTGCTTTTGCTCATTGTACCACCTGTAAGTCCCCTTATCATTTGCGAGTACATGCTGTTGCTGATAGAAAATGGCGAACCCTGAAGTTTCGATTTTTTGTGACTAGAGACATTACAGTTATATTTTTGGCGGTTCAGCTCGTAATTGCTTCTCTGGGATATTTGATGTATTTTGTGGATGGTTATCAAAATTACTGGCTTCGTCTTACTTGGGGTTTCGATACCAATATTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAACCATGTAGAGAACTGTGTTTATGTTGCTGCCATCCTGGGCTATGTGCAGACTGTCATTTACCTGGTACTCTCTGTATGTGGACTGATTGTACTGCTTGTTTCGAAAGTTGTGGAAGCTTCGCAACCGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCAGTATTATTTATAATGGCCTTGATTGTCCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCCACCATGGTTGGACAAAGAATTTGGCAACGGCACTATCACATACTTGCCAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGTGAGATGACAGGGTCAGAGTGGCTGCCTCCACCACTTCCGGCAGAGCACGTTCAGCAGCTAAAAACTCTTGGCCTTCTATAA 972 44.24 MAGQPSDSSPLIPPAPISEPSEIDLESGQGDQIQCRICLETDGRDFIAPCKCKGSSKYVHRECLDQWRAVKEGFAFAHCTTCKSPYHLRVHAVADRKWRTLKFRFFVTRDITVIFLAVQLVIASLGYLMYFVDGYQNYWLRLTWGFDTNISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTACFESCGSFATECGCLGGAGEAGLPVLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20290848 20296728 - Sed0021419.1 Sed14g1078 736796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1078 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 322 - -
Sed14g1078 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Sed14g1078 323 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
Sed14g1078 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
Sed14g1078 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
Sed14g1078 323 MobiDBLite consensus disorder prediction 1 28 - -
Sed14g1078 323 SUPERFAMILY RING/U-box 31 87 - -
Sed14g1078 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 95 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0884 Sed-Chr10:6657289 Sed14g1078 Sed-Chr14:20290848 1.20E-162 dispersed
Sed12g2385 Sed-Chr12:33719826 Sed14g1078 Sed-Chr14:20290848 1.90E-54 dispersed
Sed12g2386 Sed-Chr12:33719826 Sed14g1078 Sed-Chr14:20290848 1.90E-54 dispersed
Sed06g0010 Sed-Chr6:104718 Sed14g1078 Sed-Chr14:20290848 1.20E-08 transposed
Sed10g0883 Sed-Chr10:6657289 Sed14g1078 Sed-Chr14:20290848 9.60E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1078 - - - 0.0