Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1100 ATGAAGAAACCCACAAAAATTTCAGGATCGCCATTTTCACATTCCTTCCCAATCTTCATCGTCTTCCTTTTCATAGCTTTTCCTTCAAATGCCAATCACGCATGGTGGGAAGAAGCAGCCGGGCCTGTGGTGAAGAGAGCAGATGAAAGAACATCAATTCTCAAAACAGAGTACGGCGAGATCTCCGCCGTTGATTTCAACGACGGCTCAAGATTTGGAAATTATCATCTCCAGTTCATTACAATGGAACCCAATTCCCTGTTTCTTCCGGTTTTTCTCCATGCGGATATGGTGTTCTATGTCCACACTGGAAGTGGGAGATTGAATTGGGTTGATGATGATAATTTGAGGGAGGTTAATTTACGACGGGGAAATATTTACAGGCTTCATCCGGGTTCGATGTTCTATTTACAGAGCAATTTAGAGGATGAAAGGGAAAAGTTTCGGATTTATGCTCTGTTTTCGAGTACTGATGATGATTCATATGATCCGTCGATCGGCGCGTACTCGAGTGTCACCGATCTGGTTCGCGGCTTCGACAAGAAAGTTCTCTGTGAAGCTTTCAATGTGTCTGAGGATGTAATCGACGAACTAATGAATTCGACAAAGCCGCCGTTGATCGTGCAAGCCGCAGCAACACAAAGGGAGAAGTGGACATCAATGCCGACATCGTCTTCGTGGGAGTTAGAGGCTCGGTTCTTGAAAGGCTTCTTAGGACTCGGTGCAGGAGGGATGGGATTGAACAAGAAAAAGAAGAAAGGTGTATATAATGTTTATGAAGAAGACCCAGATTTTGAAAACTGCAATGGATGGAGTTTGACTGTGACCAAGAAAGCCTTCCATAGTTTGAAGGGCTCTAATGTCGGCCTCTTCGTCGTCAACCTCACCGCGGGGTCAATGATGGGTCCGCATTGGAATCCAAGGGCATGGGAGATTGGGATCGTGACGTCGGAAGAACCGGGGATAGTTCAGGTGGGTTGTTCAAGGACAACAAAGTCTCCATCGTGCAAGAATTGGAGTTTCATATTAGGTAAAGGCGATGTATTTGTGGTGCCAAGGTTCTATCCAATGGCACAGATGTCATTCAACAATGGAACGTTTGCATTCGTGGGATTCAGCACGACAGACAGACAGAATCAACCGCAGTTCTTGGGCGGAAGTAGCTCGGTGCTCCATGTTATGGACAGGGAAGTGCTGGCGTGGTCGTTTGATGTGAACGTGACGACAGTGGATCGGTTGTTGGGGGCGCGAGTTGAATCGGTTATATTGGAGTGTACTTCTTGTGCTGAGGAAGTAGCAAGGAAAATGGAAGAGGAGGCTGAGAGAGAAGAGGAAGAAGCAAGGAAAAGGGAGGAAGAAGAGAGGAAAAGGGAAGAGGAAGAACAGAGAAAGAGAGAAGAGGAGGAAGAAGAGAGGAAAAGGGAAGAGGAAGAACAGAGAAAGAGAGAAGAGGAAAGGAAGAGAGAAGAAGAGGAAGCAATGAGAGAAGAAGAGAGGAGAAGGAAGGAGGAGGAAGAGAGGGAAAGAGAAGAAGAAGCTAGAAAAAGGGAAGAAGAAATAGAGAGAGAGGAAGCAAGGAGAGAAGAAGAGAGGAGAGAGGAAGGGAGGAGAAGGAAGGAGGAGGAAGAGAGGGAAAGAGAAGAAGCTAGAAAAAGAGAAGAAGAAGAAGAAGAAGAAGCTAGAAAAAGGGAAGAAGAAATAGAGAGGAAAGAAGCAGAAGCTAGAAAAAGGGAAAAGGAGAGGGAAAAAGAAGAAGAAGCTAGAAAAAGGGAACAAGAGCAAGAAGAAGAAGTAAGAGAAACAGAAGAGGAAGAAGCAAAAAGAGCAGAGAAATGGAGAAGAAAATAA 1848 45.29 MKKPTKISGSPFSHSFPIFIVFLFIAFPSNANHAWWEEAAGPVVKRADERTSILKTEYGEISAVDFNDGSRFGNYHLQFITMEPNSLFLPVFLHADMVFYVHTGSGRLNWVDDDNLREVNLRRGNIYRLHPGSMFYLQSNLEDEREKFRIYALFSSTDDDSYDPSIGAYSSVTDLVRGFDKKVLCEAFNVSEDVIDELMNSTKPPLIVQAAATQREKWTSMPTSSSWELEARFLKGFLGLGAGGMGLNKKKKKGVYNVYEEDPDFENCNGWSLTVTKKAFHSLKGSNVGLFVVNLTAGSMMGPHWNPRAWEIGIVTSEEPGIVQVGCSRTTKSPSCKNWSFILGKGDVFVVPRFYPMAQMSFNNGTFAFVGFSTTDRQNQPQFLGGSSSVLHVMDREVLAWSFDVNVTTVDRLLGARVESVILECTSCAEEVARKMEEEAEREEEEARKREEEERKREEEEQRKREEEEEERKREEEEQRKREEERKREEEEAMREEERRRKEEEEREREEEARKREEEIEREEARREEERREEGRRRKEEEEREREEARKREEEEEEEARKREEEIERKEAEARKREKEREKEEEARKREQEQEEEVRETEEEEAKRAEKWRRK 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20500395 20503540 + Sed0004107.1 Sed14g1100 736818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1100 615 Coils Coil 426 611 - -
Sed14g1100 615 SMART Cupin_1_3 45 196 IPR006045 -
Sed14g1100 615 SMART Cupin_1_3 256 411 IPR006045 -
Sed14g1100 615 PANTHER OS03G0336100 PROTEIN-RELATED 48 428 IPR050253 -
Sed14g1100 615 SUPERFAMILY RmlC-like cupins 19 417 IPR011051 -
Sed14g1100 615 Gene3D Jelly Rolls 36 221 IPR014710 -
Sed14g1100 615 CDD cupin_7S_vicilin-like_N 53 216 - -
Sed14g1100 615 Gene3D Jelly Rolls 247 428 IPR014710 -
Sed14g1100 615 Pfam Cupin 49 194 IPR006045 -
Sed14g1100 615 Pfam Cupin 256 410 IPR006045 -
Sed14g1100 615 MobiDBLite consensus disorder prediction 437 615 - -
Sed14g1100 615 CDD cupin_7S_vicilin-like_C 263 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1100 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2871 Sed-Chr5:39801127 Sed14g1100 Sed-Chr14:20500395 7.70E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28