Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1101 ATGCCGGCCGGTTTCGAAAATCCCTCGCCGGCTTCCGCCGCACCTCCGCCCAAATCCGCCGCCAAGAAACAACGAAATCTCCCCGGAACGCCAGATCCAGACGCAGAAGTAATTTCTCTATCTCCAAAGACCCTTTTAGCCACAAATCGATTTATTTGCGAGATTTGCAGTAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCACCGGCGAGGTCACAGTCTTCCATGGAAGCTCCGGCAGAGATCCGGCGATGAGGTTAAGAAGAGGGTTTATGTCTGTCCTGAGATTTCTTGTGTTCATCATGATCCTTGTCGAGCTCTCGGCGATTTGACTGGGATTAAGAAGCACTTTTGCAGAAAACACGGCGAGAAGAAATGGAAATGCGACAAGTGTTCGAAGAAATACGCCGTTCAATCTGATTGCAAAGCCCATTTCAAAATTTGTGGTACTCGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGGAGGGATAGTTTCATTACGCATAGAACTTTCTGCGATGTGTTGACTGAGGAAAGTTCTAAAGCTCAATCTCGGTCGTTGGTGGATAAATCAGAGTCGAAATCGATGGCGGTGGAGCCGAATCCAGAGCCTTGTCCGCCGTCGCCACCAGCGGATTCATCTTCTCCGCAGTCATCGGTTTTGCCGATTGAGAGCGAAGATCGACTGGAGAATCCCCCGTCGTATACCGAAGAAACACCGGCTACGACAGGCATGAGTGCAGCAGTTCGGGTAGTCGATTTGCTAGCTTGTTTGCGTCCACAACTACATCAACAAGCCTGCAACCTTCTCTGCCCCTTGCTTTTACCAGACTTCATACATGCTATGCCTTATTCGAATGGCTCGTCCGACTATGCTCCTACAACGACTACCAAACCCATTTCGCTATGTCTTTCAACTAGCCATGAGGCATCAATTTTTGGTGCTGCTAGCCAAGACCTTCGGCAATATGCACCAACTCCACAACCTGTAATGTCAGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCAGCATCATCAAACGCCTCATTACTCCGCGGGTTGGGCTTAGTATCGTCTTCCTCTTCGGTTGCACAACAAGAGAGCTTACCTTGGAATCAAAGGCAAGTCAAACCCGATGGCATGTCGATCGCTGCAGGGCTCGGACTTGGACTCCCATGTGATGGAAACTCGGGATTGAAGGAACTATTGAGGAGCAGCCATTCCATACTTGCTCCAAAACACACTACTCTCGACTTCCTCGGATTGGGAATGGCAGCTGGCGGCAGCCCCAACACCGGCCTGACTGCTAAAATCACGTCGATAGGTGGGAGCGTGGATGTTAGGACAATGACTGGATCATATGTAACTGGCGACATATCCAGCAGAGATATGAACAGAAACAACTAA 1422 49.16 MPAGFENPSPASAAPPPKSAAKKQRNLPGTPDPDAEVISLSPKTLLATNRFICEICSKGFQRDQNLQLHRRGHSLPWKLRQRSGDEVKKRVYVCPEISCVHHDPCRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHFKICGTREYKCDCGTLFSRRDSFITHRTFCDVLTEESSKAQSRSLVDKSESKSMAVEPNPEPCPPSPPADSSSPQSSVLPIESEDRLENPPSYTEETPATTGMSAAVRVVDLLACLRPQLHQQACNLLCPLLLPDFIHAMPYSNGSSDYAPTTTTKPISLCLSTSHEASIFGAASQDLRQYAPTPQPVMSATALLQKAAQMGAASSNASLLRGLGLVSSSSSVAQQESLPWNQRQVKPDGMSIAAGLGLGLPCDGNSGLKELLRSSHSILAPKHTTLDFLGLGMAAGGSPNTGLTAKITSIGGSVDVRTMTGSYVTGDISSRDMNRNN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20503976 20506017 - Sed0008465.1 Sed14g1101 736819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1101 473 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 153 189 - -
Sed14g1101 473 MobiDBLite consensus disorder prediction 1 36 - -
Sed14g1101 473 FunFam protein indeterminate-domain 12-like 30 98 - -
Sed14g1101 473 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 88 122 - -
Sed14g1101 473 MobiDBLite consensus disorder prediction 186 245 - -
Sed14g1101 473 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Sed14g1101 473 SUPERFAMILY beta-beta-alpha zinc fingers 50 147 IPR036236 -
Sed14g1101 473 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 126 150 - -
Sed14g1101 473 Gene3D Classic Zinc Finger 106 186 - -
Sed14g1101 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 431 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed14g1101 473 FunFam protein indeterminate-domain 5, chloroplastic-like 105 184 - -
Sed14g1101 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 74 IPR013087 -
Sed14g1101 473 SMART c2h2final6 127 147 IPR013087 -
Sed14g1101 473 SMART c2h2final6 51 73 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1335 Sed-Chr10:28982201 Sed14g1101 Sed-Chr14:20503976 3.20E-83 dispersed
Sed11g1488 Sed-Chr11:30634818 Sed14g1101 Sed-Chr14:20503976 1.50E-61 dispersed
Sed13g0998 Sed-Chr13:7833345 Sed14g1101 Sed-Chr14:20503976 7.30E-104 dispersed
Sed13g1864 Sed-Chr13:23640561 Sed14g1101 Sed-Chr14:20503976 1.10E-78 dispersed
Sed10g0908 Sed-Chr10:7033708 Sed14g1101 Sed-Chr14:20503976 1.20E-186 wgd
Sed13g1670 Sed-Chr13:21730189 Sed14g1101 Sed-Chr14:20503976 6.30E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40620 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1101 K25869 - csv:101217597 650.203