Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1116 ATGATACGGGCGGTGATCGTGATGAACACTCAGGGCAAGCCTCGATTCGCCAAGTTCTACGATTTTCAGCCCGTAGAGAAGCAGCAGGAGCTCGTTCGCAGCGTTTATGGAGTACTCTGCAGTCGAGCTGAGAATGTCAGCAACTTCGTGGATGCGGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACATTTTGCAACCCTTTATTTCGTCTTTGTCTTTAACAGTTCCGAGAATGAGCTTGCCATGCTTGACCTGATACAAGTCTTCGTAGAAACATTGGACAAGTGCTTAAAAAATGTATGCGAGCTCGACTTAGTGTTCAACTACAGCAAGATGCATACTATTTTAGATGAAATCATTTCTGGTGGTCAAGTGTTAGAAACCAGTTCTTCTGAAGTGATGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCTTCAAATTCTATCAACTTCGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGA 498 44.18 MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELVRSVYGVLCSRAENVSNFVDAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCLKNVCELDLVFNYSKMHTILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVSGWRG 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20644784 20648022 + Sed0018673.2 Sed14g1116 736834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1116 165 Gene3D - 1 160 - -
Sed14g1116 165 FunFam AP complex subunit sigma 1 156 - -
Sed14g1116 165 Pfam Clathrin adaptor complex small chain 1 146 IPR022775 -
Sed14g1116 165 PIRSF AP_complex_sigma 1 157 IPR016635 GO:0015031(InterPro)
Sed14g1116 165 CDD AP3_sigma 1 145 IPR027155 GO:0006896(InterPro)|GO:0030123(InterPro)
Sed14g1116 165 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 145 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Sed14g1116 165 SUPERFAMILY SNARE-like 1 145 IPR011012 -
Sed14g1116 165 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1116 K12399 - - csv:101212637 309.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1115 Sed-Chr14:20644784 Sed14g1116 Sed-Chr14:20644784 1.60E-87 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1106 Blo01g01596 . Bda01g00487 . Bpe02g00351 . . Bma01g02367 . . . Cma09g00104 . . . Cpe06g00066 . . . . . . . . . . . . . . . Cone4ag1969 Cone7ag1885 . . Lsi04g01743 Csa03g04278 Chy04g00419 . . . . . . . . . Sed14g1116 . Cmo09g00100 . . . Car09g00094 . . Bhi09g02091 Tan01g5014 Cmetu04g0002 . Hepe01g1616 Mch11g0119 . . . . . . . . . . . Cme04g00471