Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1125 ATGTCCTTCAAAAGCTTTTTTCGCAAGCTATGGGAAATCAAAGATGGGGTCGGAATCGAACCGAAGCGAGGGGGAGAAGGAAGGAACTGGCGCAGTCGAACAAGGTCACATATTGCTCCTGATGAAGTGCCTCCTCGGCCTGAAGCAATTCAGCAAGGGCAGTGGGCGAATTTGCCTCCCGAGTTGCTTTTGGACGTAATTCGAAGAGTAGAAGAGAGCGAAAGGTCGTGGCCTGCTAGGAAGGCTGTTCTATTTTGTGCTTCAGTTTGCAAGTCATGGAGAGATATTACTAAGGAAGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGGGACTCTCCGATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTTTACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGAGAAACTGTTATTAGCAGCCAAGAGAGTGAGAAGGGCTACAGGTACAGATTTTGTTATATCACTGGTAGCTGATGATTTTTCTTGGACCTCCAGTACCTATATAGGCAAATTAAGGTCCAACTTTTTTGGTACAAAGTTCACTATGTATGATTGTCAACCACCAGTTGTCAGTGTTGTGCAACAGGCTAATCAATCTAATCGTAGGTTTCATGCCAAACAAGTCTCTCCAAGAATGTCTGCTTGTAACTACACCATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGAACCAGAGGACCCCGAAGAATGCACAGTGCCATGTACTCAATCCCTGCATCTTGCATTCAGCAGGGAGAAAATGCACCGACACCGACCTCGTTCATGTCCTGTGACGATGACCATCGCCCTCCTCTACCGGCTTCTAAAGGAAAAGAGCCAGACGCCGATTTCAGTTCCACAAGCATCCAAGTAGCACCGGTTCAAGCATTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCAATGCTGGTGCTTGAACTTCCGAGGGCGTGTGACGGTAGCCTCCGTAAAGAATTTTCAACTCGTGGCCGACGTCAATCCGGCCCTCAATGTGTCAGTTGAAGAACGAGAGAAGATGATATTGCAGTTTGGGAAAATTGGAAAGGACATGTTCACAATGGATTATCGCTACCCGCTCTCCGCCTTCCAGGCCTTCGCGATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTGTGAATAG 1227 47.84 MSFKSFFRKLWEIKDGVGIEPKRGGEGRNWRSRTRSHIAPDEVPPRPEAIQQGQWANLPPELLLDVIRRVEESERSWPARKAVLFCASVCKSWRDITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENESEKLLLAAKRVRRATGTDFVISLVADDFSWTSSTYIGKLRSNFFGTKFTMYDCQPPVVSVVQQANQSNRRFHAKQVSPRMSACNYTIGAISYELNVLRTRGPRRMHSAMYSIPASCIQQGENAPTPTSFMSCDDDHRPPLPASKGKEPDADFSSTSIQVAPVQALVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVNPALNVSVEEREKMILQFGKIGKDMFTMDYRYPLSAFQAFAICLSSFDTKPACE 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20719802 20723397 - Sed0007372.1 Sed14g1125 736843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1125 408 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Sed14g1125 408 Gene3D Tubby Protein; Chain A 113 408 IPR025659 -
Sed14g1125 408 MobiDBLite consensus disorder prediction 272 303 - -
Sed14g1125 408 PANTHER TUBBY-RELATED 48 407 - -
Sed14g1125 408 SUPERFAMILY Tubby C-terminal domain-like 104 408 IPR025659 -
Sed14g1125 408 PRINTS Tubby superfamily signature 318 335 IPR000007 -
Sed14g1125 408 PRINTS Tubby superfamily signature 386 408 IPR000007 -
Sed14g1125 408 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Sed14g1125 408 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Sed14g1125 408 PRINTS Tubby superfamily signature 336 352 IPR000007 -
Sed14g1125 408 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Sed14g1125 408 PRINTS Tubby superfamily signature 365 384 IPR000007 -
Sed14g1125 408 CDD F-box_AtTLP-like 55 99 - -
Sed14g1125 408 Gene3D - 48 101 - -
Sed14g1125 408 ProSitePatterns Tub family signature 2. 393 408 IPR018066 -
Sed14g1125 408 ProSitePatterns Tub family signature 1. 336 349 IPR018066 -
Sed14g1125 408 MobiDBLite consensus disorder prediction 22 47 - -
Sed14g1125 408 Pfam F-box domain 55 99 IPR001810 GO:0005515(InterPro)
Sed14g1125 408 MobiDBLite consensus disorder prediction 22 42 - -
Sed14g1125 408 Pfam Tub family 116 403 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0889 Sed-Chr13:6591280 Sed14g1125 Sed-Chr14:20719802 5.20E-164 transposed
Sed01g2541 Sed-Chr1:19082732 Sed14g1125 Sed-Chr14:20719802 1.40E-132 wgd
Sed13g1637 Sed-Chr13:21475692 Sed14g1125 Sed-Chr14:20719802 7.50E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40623 PF01167 Tub 3.90E-101 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1125 K19600 - csv:101221704 701.049