Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1127 ATGGAAACTCCAGTCGGAGCATTTCGCCGCCTTTTCTCGATAACGACTCCTCCATCGCGCCTCGTTTCATCTCCAGGATCTAACCGGAGCCCAATTTTCCGGCAATCTATAACCGGAGCGCCTCGTTCTACACTCTCACTCAATCTCTCTCGCTGCTCCTCCTCGCCGCTCGGATCTTCCTTCTCTCGCTCTAATTTTCCCTCACACTCTTTCGGATCTCAATTCGGGCCCGAACACTTCAATTCGTTTCAATCCGACTCGAACGGCGGTGCCTGGACATGGAATCGAGCTTCAGAGAGTGCGATTAAAAGAAACCTAGGGTTTCTTGGAGGCGAAAAGAGATCGGCGACGGTTGTGTTGTTAGGCTGGCTTGGATCGAAGACTAAGCATCTGCGGCGGTACGTGGAGTGGTACAATGCGAGGGGAATCAATGCCTTGATGTTTGTTCTTGATCCGAGTGAGTTTCTTTGGTTCGCGTTGAGCCGGAGAGTTGAACAGCGGATTTCGGATCTGGCGGCCGAACTCGTTTCTTGGTTATCGGATGGGGAAGAGTGTTACAACGATCGGTCCCTGATTTTTCATACTTTTAGCAATACTGGTTGGTTTGTATATGGAGCGATTCTTGAAATTTTGCAGGGGAGGGAGGATTTGCTGGAGAAGATCAAGGGGTGTATTGTTGATTCTGGTGGAGGTGATCCATTGAATCCTAAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAACAGCTCTTCTACATCTTCTCTGGTTAATGGTGAGAAAGTAGGCAAAAAGCCTCTTTTGATGGAAACCCTTGCTCTATCAACACTGGAGAAGTTTTTCTCGGTCGCTTTGAAGTTCCCCGACGTCGATAAGAGATTGAAGAAGATTGTTTCAGTACTTACAGAGAACCAGCCTTTGTATCCTGAGCTTTATCTGTACAGTCTAGGAGATAAAGTCGTGCCATTCGAATCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACGGGAACGAAGATGAATGATCTAATGACGAAATCGTTCCTAAGTTATGTGGAATTAAAGAAACAGGCGCGGAGAGACGCTGGTGGATTCGACATTGAAGAACAGAACCTGTCTTTCTTTTTCGAGAAAGTCGAAGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAACCGAAATTGAGAAACTAAATCAAGAAGCGAAATCAACCCACAGCGCGAAAATCCTCCGCGGATCAAGAGACCGAATCGACTCCGACACGGCCGGAATCCTCAGTAGAGCAAAGCTCGTGAAAGAGAAATTAGCCTCTCTCGACCGATCCAATGCCGACAACCGCCTCGTCTCCGTTGCGTACGGTGAGGGAACCGCTGTGGACAGGACAAGAACGGGGATCACAAAGGGACTAAGAATGAAATTGAGAGAAATGATGATAGAATTCCAGTCTTTGAGAGAACAACCAGGTGAAGAACGGGGACGAGTCGAGTTGGGGGACCAAGTCGAGGACCGAGCTCGGGACATGTCGGTAATGGAAATTGAGAGGAGTTTGGAGAAGCTTCATCAGGTGTTTTTGGACATGGCGATTTTGGTGGAGAGTGAAGGGGAGAAGATTGAGGATATTGAGGAGAATGTGGCGAAAGGTGCGAGGTTCATCGATGGCGGAACTCGAAGCCTTTACTATGCGAACCAGATGAAGACGAAGAACAAGAAATGGGTGTATGGAGTTTGGGGTCTCATTTTTGTTATATTGCTTGTTTGTGTTATTGTAATGTTGGTTTGTTGA 1794 47.16 METPVGAFRRLFSITTPPSRLVSSPGSNRSPIFRQSITGAPRSTLSLNLSRCSSSPLGSSFSRSNFPSHSFGSQFGPEHFNSFQSDSNGGAWTWNRASESAIKRNLGFLGGEKRSATVVLLGWLGSKTKHLRRYVEWYNARGINALMFVLDPSEFLWFALSRRVEQRISDLAAELVSWLSDGEECYNDRSLIFHTFSNTGWFVYGAILEILQGREDLLEKIKGCIVDSGGGDPLNPKVWAAGFSAAILKKNSSSTSSLVNGEKVGKKPLLMETLALSTLEKFFSVALKFPDVDKRLKKIVSVLTENQPLYPELYLYSLGDKVVPFESIELLIEKRKKTGTKMNDLMTKSFLSYVELKKQARRDAGGFDIEEQNLSFFFEKVEEIKTQMEETTNLLTEIEKLNQEAKSTHSAKILRGSRDRIDSDTAGILSRAKLVKEKLASLDRSNADNRLVSVAYGEGTAVDRTRTGITKGLRMKLREMMIEFQSLREQPGEERGRVELGDQVEDRARDMSVMEIERSLEKLHQVFLDMAILVESEGEKIEDIEENVAKGARFIDGGTRSLYYANQMKTKNKKWVYGVWGLIFVILLVCVIVMLVC 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20742460 20747704 - Sed0025954.1 Sed14g1127 736845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1127 597 Coils Coil 381 408 - -
Sed14g1127 597 Gene3D - 370 498 - -
Sed14g1127 597 PANTHER UNCHARACTERIZED 68 342 IPR008547 -
Sed14g1127 597 Gene3D - 499 597 - -
Sed14g1127 597 Pfam Eukaryotic protein of unknown function (DUF829) 117 343 IPR008547 -
Sed14g1127 597 Pfam Syntaxin 377 493 IPR006011 GO:0016020(InterPro)
Sed14g1127 597 Pfam Syntaxin 507 538 IPR006011 GO:0016020(InterPro)
Sed14g1127 597 SMART SynN_4 369 496 IPR006011 GO:0016020(InterPro)
Sed14g1127 597 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 503 565 IPR000727 -
Sed14g1127 597 SMART tSNARE_6 498 565 IPR000727 -
Sed14g1127 597 CDD SNARE_syntaxin1-like 504 562 - -
Sed14g1127 597 SUPERFAMILY t-snare proteins 373 558 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1127 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2936 Sed-Chr1:25523714 Sed14g1127 Sed-Chr14:20742460 4.20E-50 dispersed
Sed01g2937 Sed-Chr1:25523714 Sed14g1127 Sed-Chr14:20742460 4.20E-50 dispersed
Sed14g0695 Sed-Chr14:6907447 Sed14g1127 Sed-Chr14:20742460 1.20E-35 dispersed
Sed10g0918 Sed-Chr10:7200496 Sed14g1127 Sed-Chr14:20742460 1.40E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g990 Blo04g00912 Blo16g00051 . . Bpe15g00424 . . . . . Cma03g00740 . Car03g00676 . Sed14g1127 . Cpe10g00620 Bhi03g01315 Tan03g1990 Cmetu08g1065 . Hepe04g1076 . . . . . . . . . . . . . . . . . . . Bda11g01860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03248 Chy02g00640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002433 5 3 5 4 2 1 2 1 2 2 1 1 2 1 2 1 1 3 2 1 2 3 2 2 1 1 1 2 1 4 61