Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1131 ATGGACAACAGTGGAGGAGAGGGAAATTCTGCAAATATGGGGTACCCCAAGGTAAAGCTCAATGAACGAATTCTTTCTTCGATGTCTCGAAGATCTGTGGCGGCTCACCCTTGGCACGATTTGGAGATCGGACCCGGTGCACCGTCGGTTTTCAATTGTGTTATAGAAATTGGCAAAGGCAGCAAGGTTAAATATGAGCTTGACAAGACCAGTGGCCTTATAAAAGTCGACCGTGTACTTTACTCATCAGTTGTCTACCCACACAACTATGGTTTCATACCGCGTACGATTTGTGAAGACAGTGATCCAATGGATGTTCTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGATCAAGGTGAAAGGGATGACAAAATCATAGCAGTATGTGCTGATGACCCCGAATTTCGGCACTACAAGGACATCAAGGAGATCCCTCCACACCGGTTGGCTGAAATTCGCCGATTCTTCGAGGACTACAAGAAGAACGAGAACAAGAAAGTCGACGTCGAAGACTTCCTGCCAGCTGAGGCTGCCATTGATGCCATCAAGTACTCCATGGATTTGTATGCTTCCTACATAGTTGAAAGCTTGAGGAAGTAA 645 46.67 MDNSGGEGNSANMGYPKVKLNERILSSMSRRSVAAHPWHDLEIGPGAPSVFNCVIEIGKGSKVKYELDKTSGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYKDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIDAIKYSMDLYASYIVESLRK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20753712 20757651 + Sed0004565.4 Sed14g1131 736849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1131 214 Gene3D Inorganic pyrophosphatase 32 210 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Sed14g1131 214 Pfam Inorganic pyrophosphatase 53 204 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Sed14g1131 214 CDD pyrophosphatase 50 202 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Sed14g1131 214 PANTHER INORGANIC PYROPHOSPHATASE 16 213 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0004427(PANTHER)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0006796(PANTHER)|GO:0006796(InterPro)
Sed14g1131 214 SUPERFAMILY Inorganic pyrophosphatase 30 209 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Sed14g1131 214 Hamap Inorganic pyrophosphatase [ppa]. 49 205 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Sed14g1131 214 ProSitePatterns Inorganic pyrophosphatase signature. 100 106 - -
Sed14g1131 214 FunFam Soluble inorganic pyrophosphatase 4 32 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1131 K01507 - - csv:101222890 414.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1129 Sed-Chr14:20753435 Sed14g1131 Sed-Chr14:20753712 1.50E-122 dispersed
Sed14g1130 Sed-Chr14:20753712 Sed14g1131 Sed-Chr14:20753712 2.10E-122 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g997 . Blo16g00052 . . . Bpe13g00439 . . . . Cma03g00738 Cma07g00478 Car03g00674 Car07g00421 Sed14g1131 Cpe19g00816 Cpe10g00622 Bhi03g01322 Tan03g1998 Cmetu08g1280 . . . . . . . . . . . Cone8ag0818 Cone12ag0770 . . Lsi01g00667 . . Cme08g00859 . . Bda11g01859 . . . . Bma06g00117 . Cmo03g00767 Cmo07g00478 . . . . . . . . . . . . . . . . . . . . . Csa06g03255 Chy02g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126