Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1154 ATGGATCCGGACTCGGTTAAATCGACCCTTTCGAATTTAGCTTTTGGAAATGTAATGGCCGCTGCAGCTCGTGATTATCAAAAGGAATTGCTTGCCAAAGGGAAGGCTCAGGCATCAAGTTCTAACAACGAGGAGGTTGACCTTGACGAGTTGATGGATGATCCTGAGCTGGAAAAGTTGCATGCAGATAGAATTGCAGCCCTCAAGAAGGAAGCTGAAAAGAGAGAAGCAATGAAAAGACAAGGGCATGGGGAATACAGGGAAGTAACTGAGGGAGACTTTTTGGGAGAAGTCACTGCGACTGCGAGTGAAAAAGTTATTTGCCACTTCTATCATCACGAGTTCTATCGGTGCAAGATTATGGATAAGCATCTGAAGGCTCTTGCACCAAAACATTTAGACACCAAATTTATCAAGCTTGATGCAGAGAATGCACCCTTCTTTATTACCAAACTTGGAATCAAGACATTGCCTTGTGTTATACTCTTCAGGAAAGGCATTGCTACAGATAGGCTTATTGGGTTCCAAGATTTAGGAGGAAAAGATGATTTTAGTACAAGAACACTTGAAATTTTATTGACCAAGAAAGGAATCATTAGTGTGAAAAAAGATGACGAGGAAGACGAGTACGATGAAAGTAGGCGAAGCACAGTGAGATCTTCTATCCGGGTTGATTCTGATTCAGATTAG 690 41.88 MDPDSVKSTLSNLAFGNVMAAAARDYQKELLAKGKAQASSSNNEEVDLDELMDDPELEKLHADRIAALKKEAEKREAMKRQGHGEYREVTEGDFLGEVTATASEKVICHFYHHEFYRCKIMDKHLKALAPKHLDTKFIKLDAENAPFFITKLGIKTLPCVILFRKGIATDRLIGFQDLGGKDDFSTRTLEILLTKKGIISVKKDDEEDEYDESRRSTVRSSIRVDSDSD 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 20911258 20915550 + Sed0002815.1 Sed14g1154 736872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1154 229 CDD Phd_like_TxnDC9 81 193 - -
Sed14g1154 229 SUPERFAMILY Thioredoxin-like 39 199 IPR036249 -
Sed14g1154 229 PANTHER THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 12 227 - GO:0005737(PANTHER)
Sed14g1154 229 Gene3D Glutaredoxin 76 212 - -
Sed14g1154 229 Pfam Thioredoxin 88 175 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1154 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1565 Sed-Chr9:39282002 Sed14g1154 Sed-Chr14:20911258 1.20E-26 dispersed
Sed14g1154 Sed-Chr14:20911258 Sed09g1564 Sed-Chr9:39282002 6.00E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1028 . . . Bda10g00145 . . . Bma15g00991 . . Cma03g00722 . Car03g00662 . Sed14g1154 . Cpe10g00634 Bhi03g00923 Tan03g2020 Cmetu11g0188 . Hepe04g1548 . . . . . . . . . . . . . . . . . . Blo06g00141 . . Bpe10g00126 . . . . Cmo03g00749 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004628 2 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 5 1 41