Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1166 ATGGCAGCAAGAACAGAGGGAGGAGTAATCTGCTGCAACACCATTGATTCATGGTACCACCAAATTCAGAAGGGCAATGCTCCTCAACAACTGATAGTTGTGGAGTTCTCCGCATCCTGGTGCGGTCCATGTCGGTTCATCGCCCCTTTTCTAGATGAGCTTGCTAAGAAATTTCCCAGTGTTACATTTCTCAAGGTTGATGTAGATGATCTTGAGTCTGTAGCTAAGGATTGGGGGGTGGAAGCAATGCCTACTTTCATGTTTGTGAAAGAGGGAAGAATTGTGGACAAAGTGTTGGGAGCTAAGAAGGAAGAGCTGCAAGAGACTGTACTCAAGCACATGAATGCTACTGCTTCTGCTTGA 363 46.01 MAARTEGGVICCNTIDSWYHQIQKGNAPQQLIVVEFSASWCGPCRFIAPFLDELAKKFPSVTFLKVDVDDLESVAKDWGVEAMPTFMFVKEGRIVDKVLGAKKEELQETVLKHMNATASA 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21015007 21017870 - Sed0021236.1 Sed14g1166 736884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1166 120 CDD TRX_family 30 110 - -
Sed14g1166 120 ProSiteProfiles Thioredoxin domain profile. 1 116 IPR013766 -
Sed14g1166 120 FunFam Thioredoxin 8 115 - -
Sed14g1166 120 PRINTS Thioredoxin family signature 32 40 - -
Sed14g1166 120 PRINTS Thioredoxin family signature 40 49 - -
Sed14g1166 120 PRINTS Thioredoxin family signature 79 90 - -
Sed14g1166 120 ProSitePatterns Thioredoxin family active site. 33 51 IPR017937 -
Sed14g1166 120 PANTHER THIOREDOXIN 7 113 IPR050620 -
Sed14g1166 120 SUPERFAMILY Thioredoxin-like 8 115 IPR036249 -
Sed14g1166 120 Pfam Thioredoxin 15 110 IPR013766 -
Sed14g1166 120 Gene3D Glutaredoxin 1 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1166 K03671 - - csv:101203181 194.126
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1714 Sed-Chr8:32146991 Sed14g1166 Sed-Chr14:21015007 2.50E-22 dispersed
Sed08g1715 Sed-Chr8:32146991 Sed14g1166 Sed-Chr14:21015007 1.90E-22 dispersed
Sed13g1608 Sed-Chr13:21275685 Sed14g1166 Sed-Chr14:21015007 5.20E-34 dispersed
Sed14g0566 Sed-Chr14:5670800 Sed14g1166 Sed-Chr14:21015007 4.60E-24 dispersed
Sed14g0567 Sed-Chr14:5671684 Sed14g1166 Sed-Chr14:21015007 4.60E-24 dispersed
Sed10g2026 Sed-Chr10:36816966 Sed14g1166 Sed-Chr14:21015007 1.20E-10 transposed
Sed01g2529 Sed-Chr1:18889181 Sed14g1166 Sed-Chr14:21015007 4.90E-32 wgd
Sed10g0968 Sed-Chr10:7910197 Sed14g1166 Sed-Chr14:21015007 8.40E-54 wgd
Sed11g1062 Sed-Chr11:25960377 Sed14g1166 Sed-Chr14:21015007 9.60E-26 wgd
Sed13g1607 Sed-Chr13:21275685 Sed14g1166 Sed-Chr14:21015007 5.20E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34