Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1170 ATGGCTCTCGGAAGACCCCGCGCCAGCAAGAGATCCTCCTCCTCTTCCTACGCCTCCACCGTTACCACCGTCGTCTTCTTAACCTTATGTCTTTTTGGAGTATGGATGCTCACCTCCAACTCCGTCGTCCCCCCGCAGAATACCACTCGGACTTCTTCCAATACCGCCACCGCTACCACCACCGACTTAACTTCTACCTCTGGTGAAACCCAACTCCAGCTCCCCAAATCTGAGGAAAAGGAGGCCACTCCCGCATTCGAGGATAATCCTGGTGATCTTCCTCTCGATGCAATTAAATCTGATGATAATAATGTTGTTAGCAACGAGGCTAAGTCTCGTGATGATGGTTCCAAGGAAAGTGCTCGAGATGGTAGTGGCGGGAATGAGGCTCAATTGTCGGAGGAGAGTGCAATGACACAAAGCCAAGTGGAAGCGAGCCAGAAAACAGAGGAGAAGTTGGATTTGGGAGGGAGCCAAGAACAAAACACTAATTTATCTGATCAAATCAATGAATCAACGACAGAGAATAAGGAATCTGATAATAATAAATCTAGTAAAGAAGCATTGTTGGAAATTAATGCTCAAGAACAACCACAACAACAACTACCGGAAGAGCCTCAAAACAACGTTGGTCCAAAAGAAATTCAACAAGTTACAACCGAAGAGCAGCAGCCACAACAACAAGAAGCAACCGATATCCTAGAAAACAGCGCAGACTCTCAAAACGATCAACTAAAACCGGAAATTGAAGGCGAAAAAGTGCCACAAGAATCTGAAATCCGTAACCAAGATGAGGAGAATGCCCAACAGATACAACAACAACAACAACAGGATAACTTAAACATGAGCAACAATACTGAGGACATTACCTCGTTAGACCAAAATGAGCCACAGCAACAAGAACAGGATAACTCAAACACGAGCAGCAATAAGGAGGACACTGCCTCGACGGAGCAAAATGAGCCACAAAAGAAACAACAACACAGCGAAAACCCTATGGAGGATCAAGAATCATTGCAAACTCAATCTGAGGAGAGTCAAGAAATACCAAAGGACTCAAAAACAGAAACGAAAGAGGTAGAGACAACCACAGCAGGGTCACTTGAGACCTCGGGAATACGCAAAGAGTCAAAGGAATCTAAAAATTTGTGGTCGACACAGGCGGCACAGTCGGAGAACGAGAAAGATCGCCGACGGGAAGAATCCACTAGCAACGGCAGCATTTATGGGTACAGATGGGAGCTCTGCAATGTCACAGCTGGTCCCGATTACATCCCATGTTTGGACAACGAGAAAGCACTGAAGAAGCTGCGTTCAACACACCACTTCGAGCATCGGGAGAGGCACTGCCCCGAGGAAGGCCCCACCTGCCTGGTCCCACGACCGGAGGGCTACAAAAGATCAATCGGATGGCCCAATAGTAGAAACAAGATTTGGTACCACAACATACCGCACACAAAGCTAGCAAAAGTGAAAGGTCATCAAAACTGGGTCAAGGTTACTGGTGAGTTCTTAACTTTTCCCGGCGGTGGCACCCAATTCATCCACGGCGCTCTCCACTACATAGATTTTCTTCAAAAGTCGGTACCGAGTATTGCATGGGGGAAGAGGACACGAGTGATATTAGACGTGGGTTGCGGAGTTGCCAGCTTTGGCGGCTATCTCTTCGATAAAGATGTGCTTACAATGTCGTTTGCTCCAAAAGACGAGCATGAAGCTCAAATCCAATTTGCACTTGAGCGGGGAATTCCAGCCATTTCTGCTGTCATGGGTTCACAACGTCTGCCATTTCCAAGCATGGTTTTTGACATTATTCACTGTGCTCGATGCAGAGTAGCTTGGCATGCAGAAGGTGGTTTGCTTCTCTTAGAATTGAACCGAATGTTAAGGCCGGGGGGATATTTTGTTTGGTCTGCAACTCCTGTGTACCAGACCCTGGAAGAAGACGTTGAGATTTGGAAGGAAATGTCTGCTTTGACGAAGTCCATGTGTTGGGAGCTAGTGACGATTCAAAAAGACAAGCTTAACTCCATTGGAGCTGCCATTTTCAGGAAACCAACCTCAAACGCATGCTACGATCAAAGAAAACACAAGCGTCCTCCCATGTGCAAAAACGAGGATGATCCAAATGCAGCTTGGTATGTGCCATTGCAAGCGTGCATGCATCGTGTGCCAGTTGACAATACCGCGAGGGGAAGCAACTGGCCGAAACAGTGGCCGCAGCGGTTGCAAGCACCTCCTTACTGGTTAGACAGCTCCCAGATGGGAGTTTATGGCAAACCAGCTCCACAAGATTTCTTAACTGATTATGAACATTGGAAAAGAGTTGTGAATAACACTTACATGAATGGATTAGGCATAAATTTGTCCAACATCAGAAATGTGATGGATATGAGATCTGTTTATGGCGGGTTTGCAGCAGCTCTGAGAGACCTTAAAATCTGGGTAATGAATGTGGTGAATATTGACTCTCCTGATACGCTTCCAGTGATCTATGAGCGTGGTCTCTTCGGTATTTACCATGATTGGTGTGAATCCTTCAGCACATACCCAAGAACATATGATCTACTTCATGCTGATCATCTTTTCTCACAATTGAACAAGAGGTGCAAACTGCCTCCTGTCTTGGCAGAGATTGATCGAATAGTAAGACCGGGAGGCAAATTGATTGTCCGAGATGAATCCAGCACAATTGCAGAAGTAGAGAACTTGTTGAAGTCCCTTCATTGGGAAGTTCACTTGACCTTCTCCAAAAACCAGGAAGGGCTGCTGAGTGCTCAGAAAGGCGATTGGCGACCAGATACTTATGCAGAGTCCTGA 2820 46.38 MALGRPRASKRSSSSSYASTVTTVVFLTLCLFGVWMLTSNSVVPPQNTTRTSSNTATATTTDLTSTSGETQLQLPKSEEKEATPAFEDNPGDLPLDAIKSDDNNVVSNEAKSRDDGSKESARDGSGGNEAQLSEESAMTQSQVEASQKTEEKLDLGGSQEQNTNLSDQINESTTENKESDNNKSSKEALLEINAQEQPQQQLPEEPQNNVGPKEIQQVTTEEQQPQQQEATDILENSADSQNDQLKPEIEGEKVPQESEIRNQDEENAQQIQQQQQQDNLNMSNNTEDITSLDQNEPQQQEQDNSNTSSNKEDTASTEQNEPQKKQQHSENPMEDQESLQTQSEESQEIPKDSKTETKEVETTTAGSLETSGIRKESKESKNLWSTQAAQSENEKDRRREESTSNGSIYGYRWELCNVTAGPDYIPCLDNEKALKKLRSTHHFEHRERHCPEEGPTCLVPRPEGYKRSIGWPNSRNKIWYHNIPHTKLAKVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQKSVPSIAWGKRTRVILDVGCGVASFGGYLFDKDVLTMSFAPKDEHEAQIQFALERGIPAISAVMGSQRLPFPSMVFDIIHCARCRVAWHAEGGLLLLELNRMLRPGGYFVWSATPVYQTLEEDVEIWKEMSALTKSMCWELVTIQKDKLNSIGAAIFRKPTSNACYDQRKHKRPPMCKNEDDPNAAWYVPLQACMHRVPVDNTARGSNWPKQWPQRLQAPPYWLDSSQMGVYGKPAPQDFLTDYEHWKRVVNNTYMNGLGINLSNIRNVMDMRSVYGGFAAALRDLKIWVMNVVNIDSPDTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSQLNKRCKLPPVLAEIDRIVRPGGKLIVRDESSTIAEVENLLKSLHWEVHLTFSKNQEGLLSAQKGDWRPDTYAES 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21068932 21072412 + Sed0003864.1 Sed14g1170 736888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1170 939 MobiDBLite consensus disorder prediction 41 73 - -
Sed14g1170 939 Gene3D Vaccinia Virus protein VP39 517 678 IPR029063 -
Sed14g1170 939 MobiDBLite consensus disorder prediction 156 172 - -
Sed14g1170 939 FunFam probable methyltransferase PMT23 513 697 - -
Sed14g1170 939 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 423 927 IPR004159 GO:0008168(InterPro)
Sed14g1170 939 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 759 912 IPR029063 -
Sed14g1170 939 MobiDBLite consensus disorder prediction 41 404 - -
Sed14g1170 939 MobiDBLite consensus disorder prediction 245 264 - -
Sed14g1170 939 MobiDBLite consensus disorder prediction 265 316 - -
Sed14g1170 939 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 18 931 IPR004159 GO:0005737(PANTHER)|GO:0005768(PANTHER)|GO:0005802(PANTHER)|GO:0008168(InterPro)
Sed14g1170 939 MobiDBLite consensus disorder prediction 317 332 - -
Sed14g1170 939 MobiDBLite consensus disorder prediction 186 244 - -
Sed14g1170 939 MobiDBLite consensus disorder prediction 106 122 - -
Sed14g1170 939 MobiDBLite consensus disorder prediction 124 146 - -
Sed14g1170 939 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 446 682 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1170 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2587 Sed-Chr7:41436323 Sed14g1170 Sed-Chr14:21068932 3.60E-179 dispersed
Sed11g2209 Sed-Chr11:35684608 Sed14g1170 Sed-Chr14:21068932 7.10E-147 dispersed
Sed12g1127 Sed-Chr12:7447746 Sed14g1170 Sed-Chr14:21068932 6.50E-54 dispersed
Sed13g0165 Sed-Chr13:1052266 Sed14g1170 Sed-Chr14:21068932 3.10E-109 dispersed
Sed13g1652 Sed-Chr13:21611473 Sed14g1170 Sed-Chr14:21068932 7.70E-155 dispersed
Sed14g0257 Sed-Chr14:2712777 Sed14g1170 Sed-Chr14:21068932 5.60E-13 dispersed
Sed10g0972 Sed-Chr10:7994076 Sed14g1170 Sed-Chr14:21068932 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1064 . . Bda04g00033 Bda10g00167 Bpe15g00369 . Bma09g00097 Bma15g00971 . . Cma03g00706 Cma07g00451 Car03g00647 Car07g00398 Sed14g1170 Cpe19g00838 Cpe10g00647 Bhi03g00898 Tan03g2044 Cmetu04g1166 . Hepe04g1565 . . Cla01g01953 Cam01g2042 Cec04g1700 Cco04g1765 Clacu01g2064 Cmu01g1941 Cre04g1615 . . Cone6ag1660 . Lsi01g00630 . . Cme08g00900 Blo05g00816 Blo06g00330 . . Bpe10g00139 Bpe06g00031 . . . Cmo03g00732 Cmo07g00448 . . . . . . . . . . . . . . . . . . . . . Csa06g03295 Chy02g00601 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85