Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1184 ATGGCGATTAGTCATCAGCATCTCAAATCCGAAGACCCTTTTCTTCGTAATTACAAGCCCTCAGAGTTGCGCATCGCTTCTGAGTTTCTCGGCACTTGGCTTCCCTTTCTTTCCAGAGATCTGTGTCGGGATTGCACCCAGTTGCTCTCGGATCGAATCCGCGCCCTTGATCCAGCGGTTCGTTCGAACGAGACTTCGAGCTCTGCACCACCTCCTATAGAGAAAGACGTGCATGATAGTAACGGGAATCAGGATGATGTTTGTGATACAAATTCTCTTGGAAGTTGGAAAGATGAAGCGGTAATGAATTCATTAGGGAGCTGGAAGGACGGCGTAAATGAAGGGAATGAAGCTAGTGATCCATCCTCTAAATTAAATTCCAACAAGACCTCGGAGCCCCGAATGTCGTGGGCTGATATGATTCAGGAGGATGAACTAGGAGAAGATGATGATGAGTATGAAACAGAAAAAAGATTAGTCAATGCATCTGAAGGGAAATTAATTATATCGAAGGTTATTGAGAAGCCAAAGCTATCTAGAGAGCAAAGAGAGTACATAAGGTTTATGAATGTTGGGCGAAAGAAAGATTTTATTTGTTTGGAGAGGTTTAAAGGAAAACTTGTGAACATTCTTGAAGGATTGGAGCTTCATACGGGTATTTTTAGTGCTGCAGAACAAAAGCGAATAGTGGATCATGTCTATGCACTTCAGGATATGGGCATGAAGGGAGAATTCAGAGACCGAACATTTTCAGCTCCCAAAAAATGGATGAAGGGAAAGGGGCGTGTAACCCTGCAGTTTGGGTGTTGTTACAATTATGCACCTGATAAAAATGGTAATCCTCCTGGAATTCTTCGAAGTGAAATTGTGAATCCAATACCTTCTCTCTTTAAGGTGATCATTAGAAGGTTGGTGAGCTGGCACGTGCTTCCGCCAACATGTGTTCCTGATAGCTGCATTGTGAACATCTATGATGAAGGGGATTGTATTCCTCCCCATATTGATAACCACGATTTTGTTCGACCTTTTTGCACCGTGTCATTCCTCAGTGAATGCAATATTGTTTTCGGATCCAACCTTTCTATCGTAGGACCTGGTGAATTTTCCGGGCCAATTGCAATTCCTCTTCCTGTGGGGTCTGTTCTCGTGTTAAATGGAAATGGAGCTGATGTTGCTAAACATTGTGTACCTGCAGTCCCTTCAAAGAGGATTTCAATTACATTTAGAAGAATAGATGAATCCAAAAGGCCAATTGGGTATGTTCAAGAACCTGATTTGCAGGGAATTCAACCATTGCCCTATGAATCAAGTGAAAATGAGGTACCAGCTTCTCCTGTATCATCAGAAAGGGAAATAAGGAGGCAGCCATTCTGGAGGGGTAGGGGATCTGGAAACCGAAGCGACACTCGATATGAGCCACGAAATCCAGGTCGGGGTCAGCATAGGCCAGCAGATAGGAGGTACAGGGTAAATCTAGACAGCTGA 1485 43.7 MAISHQHLKSEDPFLRNYKPSELRIASEFLGTWLPFLSRDLCRDCTQLLSDRIRALDPAVRSNETSSSAPPPIEKDVHDSNGNQDDVCDTNSLGSWKDEAVMNSLGSWKDGVNEGNEASDPSSKLNSNKTSEPRMSWADMIQEDELGEDDDEYETEKRLVNASEGKLIISKVIEKPKLSREQREYIRFMNVGRKKDFICLERFKGKLVNILEGLELHTGIFSAAEQKRIVDHVYALQDMGMKGEFRDRTFSAPKKWMKGKGRVTLQFGCCYNYAPDKNGNPPGILRSEIVNPIPSLFKVIIRRLVSWHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLSIVGPGEFSGPIAIPLPVGSVLVLNGNGADVAKHCVPAVPSKRISITFRRIDESKRPIGYVQEPDLQGIQPLPYESSENEVPASPVSSEREIRRQPFWRGRGSGNRSDTRYEPRNPGRGQHRPADRRYRVNLDS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21149203 21153976 + Sed0005535.1 Sed14g1184 736902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1184 494 MobiDBLite consensus disorder prediction 116 135 - -
Sed14g1184 494 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 315 412 IPR005123 -
Sed14g1184 494 Gene3D - 198 417 IPR037151 -
Sed14g1184 494 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 9 469 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
Sed14g1184 494 MobiDBLite consensus disorder prediction 107 137 - -
Sed14g1184 494 MobiDBLite consensus disorder prediction 465 494 - -
Sed14g1184 494 MobiDBLite consensus disorder prediction 429 494 - -
Sed14g1184 494 Pfam 2OG-Fe(II) oxygenase superfamily 216 409 IPR027450 -
Sed14g1184 494 SUPERFAMILY Clavaminate synthase-like 210 411 - -
Sed14g1184 494 MobiDBLite consensus disorder prediction 58 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1184 K10767 - - csv:101203292 811.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0392 Sed-Chr7:2944739 Sed14g1184 Sed-Chr14:21149203 9.80E-28 dispersed
Sed04g1613 Sed-Chr4:30930543 Sed14g1184 Sed-Chr14:21149203 3.90E-105 transposed
Sed10g0989 Sed-Chr10:8378480 Sed14g1184 Sed-Chr14:21149203 7.60E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48