Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1189 ATGGAGGTCGGCATGACATTCAAAGACTACAATGGTAGAATCAGTTCAATGGATTTTCATAGGACTTCAGGCTATCTGGTGACTGCAAGTGATAATGAGTCCATCCGGCTTTATGATGTTGCCAGTGCAACATGTTTGAAAACAATTAACAGCAAAAAGTATGGGGTTGATCTGGTTTGCTTTACTTCTCATCCTACAACAGTGATATATTCTTCCAAAAATGGATGGGATGAGTCTCTGCGGCTTCTTTCGTTGAACGACAATAAGTACCTGCGATACTTTAAAGGTCATCACGACAGAGTTGTATCACTCAGCTTTTGCGCTCGTACAGATTGCTTTATATCTGGTTCTCTTGATCGAACTGTTTTGCTTTGGGATCAAAGGGCTGAGAAATGTCAGGGTCTTTTACGTGTACAAGGAAAGCCTGCTACAACTTATGATGAACAAGGTGTGGTCTTTGCTATTGCCTTTGGAGGGTACATAAGGATGTTTGATGCTCGAAAATATGAAAAGGGTCCTTTCAATATATTTTCTGTTGGGGAAGACGTATCTGATGCAAATGTAGTGAAGTTCAGTAATGATGGGAGACTCATGTTGTTGACAACTTCGGATGGGCATATTCATGTTCTTGATTCTTTCCGAGGAACACTATTATCCACATACAATGTGAAACCTATTTCAAGCAATTCGACGTTGGAGGCCTCTTTTAGCCCTGAGGGAATGTTTGTCCTATCAGGTAGCCATGTTTCGTGA 753 41.04 MEVGMTFKDYNGRISSMDFHRTSGYLVTASDNESIRLYDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFKGHHDRVVSLSFCARTDCFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATTYDEQGVVFAIAFGGYIRMFDARKYEKGPFNIFSVGEDVSDANVVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISSNSTLEASFSPEGMFVLSGSHVS 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21171929 21176805 - Sed0013451.4 Sed14g1189 736907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1189 250 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
Sed14g1189 250 Pfam WD domain, G-beta repeat 89 126 IPR001680 GO:0005515(InterPro)
Sed14g1189 250 Pfam WD domain, G-beta repeat 5 39 IPR001680 GO:0005515(InterPro)
Sed14g1189 250 Gene3D - 1 250 IPR015943 GO:0005515(InterPro)
Sed14g1189 250 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515(InterPro)
Sed14g1189 250 ProSiteProfiles Trp-Asp (WD) repeats profile. 7 48 IPR001680 GO:0005515(InterPro)
Sed14g1189 250 PANTHER WD40 REPEAT PROTEIN SWD2 1 248 IPR037867 GO:0003682(PANTHER)|GO:0048188(PANTHER)
Sed14g1189 250 SMART WD40_4 170 211 IPR001680 GO:0005515(InterPro)
Sed14g1189 250 SMART WD40_4 1 39 IPR001680 GO:0005515(InterPro)
Sed14g1189 250 SMART WD40_4 87 126 IPR001680 GO:0005515(InterPro)
Sed14g1189 250 SUPERFAMILY WD40 repeat-like 5 248 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1189 K14962 - - csv:101202819 476.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1187 Sed-Chr14:21171929 Sed14g1189 Sed-Chr14:21171929 2.70E-141 dispersed
Sed14g1188 Sed-Chr14:21171929 Sed14g1189 Sed-Chr14:21171929 4.40E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1107 . . Bda04g00022 . . . . . . . Cma03g00688 Cma07g00430 Car03g00634 Car07g00378 Sed14g1189 Cpe19g00857 Cpe10g00661 Bhi03g00871 Tan03g2068 Cmetu04g0034 . Hepe04g1588 . . Cla01g01977 Cam01g2071 Cec04g1730 Cco04g1795 Clacu01g2092 Cmu01g1968 Cre04g1643 . . . . Lsi01g00605 . . Cme08g00924 Blo05g00828 . . . . Bpe06g00022 . . . Cmo03g00714 Cmo07g00428 . . . . . . . . . . . . . . . . . . . . . Csa06g03322 Chy02g00578 .