Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1194 ATGGAGCAGTGGAGAACTGGAGATTTCGCTCAATCTAGGTTAAGAACAGATGCGGAAGTAAAAGATCCAGTAGCAGTGAGAAAAATCCAAAAGGCAGATCGTGAAAAATTGAGAAGGGATAGGCTGAACGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTCATAGACACCATCCAAATGCTGAAGGATTTAACGGCCGAAGTAAATCGATTAAAGTCTGACCATGAAGCTCTTTCTGAAGAATCGCGCGAGTTAACCCAGGAAAAAAATGAGCTTAGAGAAGAGAAGACGTCAATAAAATCAGATATTGAAAATCTAAATGCCCAGTATCAACAAAGACTGAGGGTCATGTTTCCCTGGGCTACTATGGATCCTTCGGTGGTCATGGGGTCCTCGTATCCATACCCGGTTCCCGTTCCCATTCCCCCAGGACCAATTCCCATGCACCCAACACTGCAGCCCTTCACCTTCTTCGGAAACCAGAATCCTGGTGCTATTCCTAATCCCCGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATTGAACAGCCTTCTGCCCAATACGCTTCCAATTCACATATCTCCAGCAAACAAGATTCTAGAAGTAAGTCATCCAATCAGCCTAGGCGTAGCAATGTGGAACGATGCGACGAATCTAATGATGTAGCAACGGATCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCATCCTCCGGAAGCAAGAAAGGAAAGCAGACACAAAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCTTCAAGTAGGCTTTCTTCGTCCCAAGTTCTCCAAGATAGCTCCTCTAACAGCATTGGCGACGTCCCGTAA 897 44.93 MEQWRTGDFAQSRLRTDAEVKDPVAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILIDTIQMLKDLTAEVNRLKSDHEALSEESRELTQEKNELREEKTSIKSDIENLNAQYQQRLRVMFPWATMDPSVVMGSSYPYPVPVPIPPGPIPMHPTLQPFTFFGNQNPGAIPNPRSTFVPYTAAANHPIEQPSAQYASNSHISSKQDSRSKSSNQPRRSNVERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQTQRKEKSVTDCSSSSRLSSSQVLQDSSSNSIGDVP 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21229329 21233245 - Sed0015691.1 Sed14g1194 736912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1194 298 SMART finulus 32 82 IPR011598 GO:0046983(InterPro)
Sed14g1194 298 MobiDBLite consensus disorder prediction 274 298 - -
Sed14g1194 298 MobiDBLite consensus disorder prediction 201 222 - -
Sed14g1194 298 Gene3D - 25 109 IPR036638 GO:0046983(InterPro)
Sed14g1194 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 76 IPR011598 GO:0046983(InterPro)
Sed14g1194 298 MobiDBLite consensus disorder prediction 244 259 - -
Sed14g1194 298 PANTHER TRANSCRIPTION FACTOR BHLH121 10 296 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Sed14g1194 298 MobiDBLite consensus disorder prediction 86 108 - -
Sed14g1194 298 MobiDBLite consensus disorder prediction 201 298 - -
Sed14g1194 298 Coils Coil 66 121 - -
Sed14g1194 298 MobiDBLite consensus disorder prediction 223 239 - -
Sed14g1194 298 CDD bHLH_AtILR3_like 31 105 - -
Sed14g1194 298 Pfam Helix-loop-helix DNA-binding domain 27 77 IPR011598 GO:0046983(InterPro)
Sed14g1194 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 96 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0220 Sed-Chr1:1761469 Sed14g1194 Sed-Chr14:21229329 6.80E-57 dispersed
Sed01g0221 Sed-Chr1:1761469 Sed14g1194 Sed-Chr14:21229329 6.80E-57 dispersed
Sed05g3087 Sed-Chr5:41083797 Sed14g1194 Sed-Chr14:21229329 3.20E-09 dispersed
Sed07g2654 Sed-Chr7:41976708 Sed14g1194 Sed-Chr14:21229329 7.60E-11 dispersed
Sed12g1942 Sed-Chr12:30502040 Sed14g1194 Sed-Chr14:21229329 2.00E-09 dispersed
Sed14g1194 Sed-Chr14:21229329 Sed14g1197 Sed-Chr14:21229329 1.20E-138 dispersed
Sed14g1194 Sed-Chr14:21229329 Sed14g1195 Sed-Chr14:21229329 5.60E-136 tandem
Sed10g0998 Sed-Chr10:8597055 Sed14g1194 Sed-Chr14:21229329 8.00E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40629 PF00010 HLH 1.30E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1194 - - - 0.0