Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1195 ATGGAGCAGTGGAGAACTGGAGATTTCGCTCAATCTAGGTTTGTCACAGATGAATTTGTTCCTCCTGAATCTAGGTTAAGAACAGATGCGGAAGTAAAAGATCCAGTAGCAGTGAGAAAAATCCAAAAGGCAGATCGTGAAAAATTGAGAAGGGATAGGCTGAACGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTCATAGACACCATCCAAATGCTGAAGGATTTAACGGCCGAAGTAAATCGATTAAAGTCTGACCATGAAGCTCTTTCTGAAGAATCGCGCGAGTTAACCCAGGAAAAAAATGAGCTTAGAGAAGAGAAGACGTCAATAAAATCAGATATTGAAAATCTAAATGCCCAGTATCAACAAAGACTGAGGGTCATGTTTCCCTGGGCTACTATGGATCCTTCGGTGGTCATGGGGTCCTCGTATCCATACCCGGTTCCCGTTCCCATTCCCCCAGGACCAATTCCCATGCACCCAACACTGCAGCCCTTCACCTTCTTCGGAAACCAGAATCCTGGTGCTATTCCTAATCCCCGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATTGAACAGCCTTCTGCCCAATACGCTTCCAATTCACATATCTCCAGCAAACAAGATTCTAGAAGTAAGTCATCCAATCAGCCTAGGCGTAGCAATGTGGAACGATGCGACGAATCTAATGATGTAGCAACGGATCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCATCCTCCGGAAGCAAGAAAGGAAAGCAGACACAAAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCTTCAAGTAGGCTTTCTTCGTCCCAAGTTCTCCAAGATAGCTCCTCTAACAGCATTGGCGACGTCCCGTAA 933 44.69 MEQWRTGDFAQSRFVTDEFVPPESRLRTDAEVKDPVAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILIDTIQMLKDLTAEVNRLKSDHEALSEESRELTQEKNELREEKTSIKSDIENLNAQYQQRLRVMFPWATMDPSVVMGSSYPYPVPVPIPPGPIPMHPTLQPFTFFGNQNPGAIPNPRSTFVPYTAAANHPIEQPSAQYASNSHISSKQDSRSKSSNQPRRSNVERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQTQRKEKSVTDCSSSSRLSSSQVLQDSSSNSIGDVP 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21229329 21233245 - Sed0015691.2 Sed14g1195 736913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1195 310 SMART finulus 44 94 IPR011598 GO:0046983(InterPro)
Sed14g1195 310 MobiDBLite consensus disorder prediction 286 310 - -
Sed14g1195 310 MobiDBLite consensus disorder prediction 213 234 - -
Sed14g1195 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 108 IPR036638 GO:0046983(InterPro)
Sed14g1195 310 Gene3D - 37 121 IPR036638 GO:0046983(InterPro)
Sed14g1195 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 88 IPR011598 GO:0046983(InterPro)
Sed14g1195 310 MobiDBLite consensus disorder prediction 256 271 - -
Sed14g1195 310 Pfam Helix-loop-helix DNA-binding domain 39 89 IPR011598 GO:0046983(InterPro)
Sed14g1195 310 MobiDBLite consensus disorder prediction 98 120 - -
Sed14g1195 310 MobiDBLite consensus disorder prediction 213 310 - -
Sed14g1195 310 PANTHER TRANSCRIPTION FACTOR BHLH121 22 308 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Sed14g1195 310 CDD bHLH_AtILR3_like 43 117 - -
Sed14g1195 310 Coils Coil 78 133 - -
Sed14g1195 310 MobiDBLite consensus disorder prediction 235 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0207 Sed-Chr8:1176564 Sed14g1195 Sed-Chr14:21229329 5.30E-08 dispersed
Sed10g0998 Sed-Chr10:8597055 Sed14g1195 Sed-Chr14:21229329 1.60E-74 dispersed
Sed14g1195 Sed-Chr14:21229329 Sed14g1197 Sed-Chr14:21229329 4.50E-136 dispersed
Sed14g1194 Sed-Chr14:21229329 Sed14g1195 Sed-Chr14:21229329 5.60E-136 tandem
Sed14g1195 Sed-Chr14:21229329 Sed14g1196 Sed-Chr14:21229329 2.80E-146 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40630 PF00010 HLH 1.30E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1195 - - - 0.0