Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1204 ATGATTTATTGCTTTCTTCAGTTGGTAGAGAAGGATCCGGATAGGGCAATTCCTCTGTTTTGGGCAGCCATTAATGCTGGGGATAGAGTTGATAGTGCCTTAAAAGATATGGCCATTGTTATGAAACAGCAGAATCGAGCCGAAGAAGCGATTGAAGCGATTAAATCATTGCGGAATCGGTGTTCCGATCAAGCTCAGGAGTCTCTTGACAACATTCTTCTGGATCTATACAAGAGATGTGGAAGATTGGATGACCAGACTGCTCTTTTGAAGCATAAATTGTTCTTGATTCATCAAGGTTTAGCATTTAATGGTAAGAGGACTAAAACAGCAAGATCTCATGGGAAAAAGTTTCAAGTCTCTATTGAGCAAGAAGCAACTAGATTGCTGGGGAATTTGGGATGGGCGTTGATGCAGCAGAACAATTACGTCGAAGCCGAGGACGCTTATCGAAAAGCGCTTTCGATAGCACCGGACAACAACAAAATGTGCAACCTTGGAATCTGCTTGATGAAACAAGGAAGAATTTCTGAGGCTAAAGAGAACCTACGTAGAGTTAAACCAGCAGTTGCAGATGGGCCAAGAGGAACGGATTCCCATCTCAAAGCTTATGAAAGAGCACAACAAATGCTCCAAGATCTCGAGTCGGAAATGATGAATGGAGGCGGCGACAGGATTGAACAGCGGCGTCTCTTCGACGCGTTCCTCGGTTCTTCGTCGATTTGGCAACCGCAGCCTTGCAAGGATCAGACAACCACCTTGCCAACTCTACCTGTTACTAATCCCACAAGGACAATTCGTGATGATTTTGGTGATGAAAACATTGATATGAATTTGTTAACAAACCAGATTGTTGTTCCTCAACAACAACAGCAACAACAGAAACTACTTATCAAACAAGTTCAAGTTTCTTTAGGGAACTCATTGAATGTTGCTGCTCAGCCATTTTTCTCATCAAAATTTGTTAGTGAATCCAAACCCAAAGTTCCTTTAGGAAACCAATTTCCTGAAGGTCTGAAAAGAACAAGGTCTGGAAATGCAACCAATCCAAGGCCATGTCTTATTTCAGAGGAGACAGATAAATTGACAGCATTGCTGCCTAATGACAATGACTTTGAAGAGGCTATTCTTGCTGCAGTTTTGGGCACAGCAACTGAAGTAGAGACGAAAGCAACCGACGGCGATGAACTCGACGGTGGCGTACATCAGAGGAAGATTGAGAAAAGGCTCAAGGTTTTTCAAGACATTACACTTTCCTTGAGTCCCAAAGCCTAA 1275 42.9 MIYCFLQLVEKDPDRAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRNRCSDQAQESLDNILLDLYKRCGRLDDQTALLKHKLFLIHQGLAFNGKRTKTARSHGKKFQVSIEQEATRLLGNLGWALMQQNNYVEAEDAYRKALSIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVADGPRGTDSHLKAYERAQQMLQDLESEMMNGGGDRIEQRRLFDAFLGSSSIWQPQPCKDQTTTLPTLPVTNPTRTIRDDFGDENIDMNLLTNQIVVPQQQQQQQKLLIKQVQVSLGNSLNVAAQPFFSSKFVSESKPKVPLGNQFPEGLKRTRSGNATNPRPCLISEETDKLTALLPNDNDFEEAILAAVLGTATEVETKATDGDELDGGVHQRKIEKRLKVFQDITLSLSPKA 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21297064 21299508 + Sed0013645.2 Sed14g1204 736922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1204 424 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515(InterPro)
Sed14g1204 424 Coils Coil 197 217 - -
Sed14g1204 424 SMART tpr_5 127 160 IPR019734 GO:0005515(InterPro)
Sed14g1204 424 SUPERFAMILY TPR-like 4 185 IPR011990 GO:0005515(InterPro)
Sed14g1204 424 Gene3D Tetratricopeptide repeat domain 6 193 IPR011990 GO:0005515(InterPro)
Sed14g1204 424 ProSiteProfiles TPR repeat region circular profile. 127 160 - -
Sed14g1204 424 Pfam Tetratricopeptide repeat 129 160 IPR019734 GO:0005515(InterPro)
Sed14g1204 424 PANTHER PROTEIN POLLENLESS 3-LIKE 2 6 418 IPR044961 -
Sed14g1204 424 Coils Coil 40 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1204 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1017 Sed-Chr10:8843916 Sed14g1204 Sed-Chr14:21297064 1.80E-190 dispersed
Sed14g1203 Sed-Chr14:21296774 Sed14g1204 Sed-Chr14:21297064 1.70E-235 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1142 . . . Bda10g00191 . . . . . . . Cma07g00415 . Car07g00364 Sed14g1204 . Cpe10g00675 Bhi03g00842 Tan03g2099 Cmetu04g2642 . Hepe04g1607 . . . . . . . . . . . . Cone9ag1616 . . . Cme08g00947 . . . . Bpe10g00163 . . . . . Cmo07g00412 . . . . . . . . . . . . . . . . . . . . . Csa06g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38