Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1205 ATGTACTTTGGCATTTTTTTCTCATTCGTTTTCTCTAAATATAAACCCAAAATCTCAACTCCGGCCAACAATGTCTTCAATTTTCTGATAATCTCAGCGAAATATATCAGCATTGTTATCGACCTTAATTCGATGGCGCCTACCAAAGTCGATGCTACGTACCTGAAGGAGATCGAGAAGGCCCGCCGAGATCTTCGCGCTCTCATCTCGAAGGAGCAATGCGCTCCTATTATGCTTCGTTTAGCGTGGCATGATGCTGGTACTTATGATGCTAAAACCAAAACTGGAGGTCCGAATGGATCCATCAGATTCATGGATGAATTGAGACATAATTCAAACATGGGACTCAAAATTGCAGTTGACTTATGTGAACCTGTGAAGACTAGACATCCCAAAATCACATATGCAGACTTGTATCAGCTTGCTGGTGTTGTTGCTGTGGAGGTCACTGGCGGTCCATCCATTGATTTTGTCCCTGGAAGAAAGGACTCTCATGTAGTTCCAGAAGAAGGGCGCCTCCCAGTTGCCACCAAAGGTGCATCTCATTTAAGAGAAATCTTTTACAGAATGGGACTAACTGACAAGGATATTGTGGCATTATCTGGAGGCCACACATTGGGAAGAGCACACAAGGATAGATCAAATTTCGAAGGCGCATGGACAAAGGACCCTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGATGAAAGAAAATGACTCTCAGTCTAAGGAACAACTGTTGAAGCTTAATTCAGATAAGGCATTGGTTGCAGATCCTAAGTTTTGCCAATATGTGAAGGAATATGCAAAGGATGAAGATAAGTTTTTCGAGGATTACGCCGCGTCTCACAAGAAACTGTCCGAGCTAGGCTTCACACAACCTTCAACGGTTCTCAGTAGCAGAGTTTCTTCATGGAAATATCAAATTCTGGTAGCTGCAATTGTAGCAGTTGTTGGAATACTGAGCTTAAGAGCCATGTCTTCTGAGGGGGGATGGCTTTCCAAGTTCACTTCTATCTAA 1023 42.82 MYFGIFFSFVFSKYKPKISTPANNVFNFLIISAKYISIVIDLNSMAPTKVDATYLKEIEKARRDLRALISKEQCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRFMDELRHNSNMGLKIAVDLCEPVKTRHPKITYADLYQLAGVVAVEVTGGPSIDFVPGRKDSHVVPEEGRLPVATKGASHLREIFYRMGLTDKDIVALSGGHTLGRAHKDRSNFEGAWTKDPLKFDNSYFVELMKENDSQSKEQLLKLNSDKALVADPKFCQYVKEYAKDEDKFFEDYAASHKKLSELGFTQPSTVLSSRVSSWKYQILVAAIVAVVGILSLRAMSSEGGWLSKFTSI 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21299923 21305860 - Sed0021051.1 Sed14g1205 736923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1205 340 CDD ascorbate_peroxidase 46 295 - -
Sed14g1205 340 ProSitePatterns Peroxidases proximal heme-ligand signature. 196 206 IPR019793 -
Sed14g1205 340 FunFam L-ascorbate peroxidase, cytosolic 174 284 - -
Sed14g1205 340 Gene3D - 61 291 - -
Sed14g1205 340 Coils Coil 55 75 - -
Sed14g1205 340 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Haem peroxidase superfamily signature 75 89 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Haem peroxidase superfamily signature 196 211 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Haem peroxidase superfamily signature 220 235 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Haem peroxidase superfamily signature 133 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 ProSiteProfiles Plant heme peroxidase family profile. 133 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 SUPERFAMILY Heme-dependent peroxidases 50 302 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 Pfam Peroxidase 62 272 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 Gene3D Peroxidase, domain 2 174 284 - -
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 190 211 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 75 90 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 93 103 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 54 74 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 107 131 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 132 150 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 172 189 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 151 163 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PRINTS Plant ascorbate peroxidase signature 212 236 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed14g1205 340 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 42 300 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(PANTHER)|GO:0034599(InterPro)|GO:0042744(PANTHER)
Sed14g1205 340 ProSitePatterns Peroxidases active site signature. 75 86 IPR019794 GO:0004601(InterPro)
Sed14g1205 340 FunFam Cytosolic ascorbate peroxidase 61 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1205 K00434 - - csv:101220337 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1377 Sed-Chr1:10237919 Sed14g1205 Sed-Chr14:21299923 4.20E-32 dispersed
Sed01g1378 Sed-Chr1:10237919 Sed14g1205 Sed-Chr14:21299923 4.80E-32 dispersed
Sed04g3856 Sed-Chr4:46915812 Sed14g1205 Sed-Chr14:21299923 7.60E-106 dispersed
Sed05g2222 Sed-Chr5:34980340 Sed14g1205 Sed-Chr14:21299923 8.70E-102 dispersed
Sed13g1343 Sed-Chr13:18924192 Sed14g1205 Sed-Chr14:21299923 4.20E-84 dispersed
Sed13g1344 Sed-Chr13:18953738 Sed14g1205 Sed-Chr14:21299923 2.50E-78 dispersed
Sed14g1205 Sed-Chr14:21299923 Sed13g0179 Sed-Chr13:1167711 6.90E-13 dispersed
Sed10g1022 Sed-Chr10:8895536 Sed14g1205 Sed-Chr14:21299923 3.20E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63