Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1250 ATGGCGTTTTCCGATGAGAACAGTCATAACTTGATTAAACCAACTGGGTTTCTTCCAGGAGGGTTGGAGAAGAGTGGGAGGGTGTTTGGCCAGGAGAGTAGTAGAATCAATAATCGAAGAGTTCTTAATGACATTAATCAGAATTCTGTGGTGAATCAAGCTTATCCTTGTGTTGTCAACAAGAGAGTTCTTTCCGGAAAGCAAGAGATCTGTGAGAAGAAGCAGGTTGATCCATTTCATAGACCGATTACAAGGAAATTTGCTGCTCAAATTGCGAGTAGTCAACAGCTCCATCAGCCACAAGAAAATAATAAACCCAATTTGTTTCTTACAAACTCAAATGCATTTGGACATTCCATATTTGTAGACGACAGTTGCAAAACAGTTGAAAATGACCATCCAGTTCCTATGTTCTTGGAGAAACCAGAACCATCATTGCATCAGGAAGCAAGCCAAATGGAGGAAGTTGAAATGGAGGATATCGAAGACTACGACGAAGACCCAGTAGTCGACATTGACCTTGAAGATTCCAAGAACCCTCTTGCTGTTGTCGACTACATTGACGATCTCTACACACACTACAGAAAGATAGAGAATTCAAGCTGTGTTCCCCCAAACTACATGACAAAACAAATTGACATTAATGAGAAAATGAGATCCATACTAATTGACTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACATTGTTTCTCACTGTGAATCTGATAGACAGATTTTTGTCCCAAAAATCAATTGTGAGAAAGAAGCTTCAACTGGTTGGTTTAGTTTCTTTGCTCTTAGCTTGCAAATATGAGGAAGTGTCTGTTCCTGTTGTGGGAGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAGAGAAGTTCTTGAAATGGAGACAGTGATGCTCAATTGTTTGCAGTTTAATATGTCAGTTCCTACACCCTTTGTTTTCCTCCAAAGGTTCCTTAAAGCCGCTCAATCTGACAAAAAGCTTGAGCTAATGGCGTTCTTCTTGATCGAGCTCTCGCTTGTGGAGTATGTAATGCTGAGATTCCCGCCCTCACTGCTAGCGGCGGCGGCGATTTACACTGCTCAATGTACTCTCACTGGTGTCAAAGGATGGAGCCGGACCTGCGAATGGCATTCCACGTTCTCAGAAGACCAACTTCTAGAATGCTCTAGGCTGATGGTGGGGTTCCATCAGACGGCGGCGACCGGGAAGCTCACCGGGGTTCATAGGAAGTACTGTACGTCAAAATTTAACTATACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAACAATAA 1332 42.12 MAFSDENSHNLIKPTGFLPGGLEKSGRVFGQESSRINNRRVLNDINQNSVVNQAYPCVVNKRVLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHQPQENNKPNLFLTNSNAFGHSIFVDDSCKTVENDHPVPMFLEKPEPSLHQEASQMEEVEMEDIEDYDEDPVVDIDLEDSKNPLAVVDYIDDLYTHYRKIENSSCVPPNYMTKQIDINEKMRSILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKSIVRKKLQLVGLVSLLLACKYEEVSVPVVGDLILISDKAYSRREVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYVMLRFPPSLLAAAAIYTAQCTLTGVKGWSRTCEWHSTFSEDQLLECSRLMVGFHQTAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQQ 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 21622118 21625576 - Sed0027501.1 Sed14g1250 736968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1250 443 SMART cyclin_7 224 308 IPR013763 -
Sed14g1250 443 SMART cyclin_7 321 403 IPR013763 -
Sed14g1250 443 Pfam Cyclin, N-terminal domain 189 315 IPR006671 -
Sed14g1250 443 Gene3D - 189 429 - -
Sed14g1250 443 CDD CYCLIN_AtCycB-like_rpt2 317 433 - -
Sed14g1250 443 FunFam G2/mitotic-specific cyclin-1 311 429 - -
Sed14g1250 443 SUPERFAMILY Cyclin-like 316 434 IPR036915 -
Sed14g1250 443 Gene3D - 203 315 - -
Sed14g1250 443 ProSitePatterns Cyclins signature. 219 250 IPR048258 -
Sed14g1250 443 SMART Cyclin_C_2 317 434 IPR004367 -
Sed14g1250 443 Pfam Cyclin, C-terminal domain 317 433 IPR004367 -
Sed14g1250 443 CDD CYCLIN_AtCycB-like_rpt1 166 312 - -
Sed14g1250 443 PANTHER CYCLINS 158 421 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed14g1250 443 FunFam G2/mitotic-specific cyclin 203 310 - -
Sed14g1250 443 SUPERFAMILY Cyclin-like 178 314 IPR036915 -
Sed14g1250 443 PIRSF Cyclin_A_B_D_E 22 443 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3556 Sed-Chr4:44941154 Sed14g1250 Sed-Chr14:21622118 4.40E-53 dispersed
Sed10g1067 Sed-Chr10:9737830 Sed14g1250 Sed-Chr14:21622118 2.80E-134 dispersed
Sed13g2048 Sed-Chr13:25269435 Sed14g1250 Sed-Chr14:21622118 2.70E-47 dispersed
Sed14g0043 Sed-Chr14:554566 Sed14g1250 Sed-Chr14:21622118 8.70E-64 dispersed
Sed14g0044 Sed-Chr14:554566 Sed14g1250 Sed-Chr14:21622118 7.20E-64 dispersed
Sed14g1250 Sed-Chr14:21622118 Sed14g1252 Sed-Chr14:21622118 1.60E-187 dispersed
Sed14g1250 Sed-Chr14:21622118 Sed14g1251 Sed-Chr14:21622118 5.20E-247 tandem
Sed01g2437 Sed-Chr1:18169120 Sed14g1250 Sed-Chr14:21622118 2.20E-120 transposed
Sed10g1066 Sed-Chr10:9737830 Sed14g1250 Sed-Chr14:21622118 9.20E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1250 K21777 - csv:101216622 778.474