Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g1325 | ATGGATAGTGGTAATGGAAGTTCTTCAAGTATGATGAATTTTGGAGATCATCATCAAAATAATAACTTGATGATGATGCTGCCTTTAATGTCAGCATGTAATAATAATAATAATAATAATAATAATAATAATCCATTCCCATCTCAGCTTCCTCCTAATTTCAACAACAACACTTCCAATTCTATTTCTAATTACTTCATGGACCAAAACGGCAATAACAACAACCACGAGGGCATCAATGCAAATTCTACCAATTCTGATGTCAAGGCCAAAATCATGGCTCATCCTCATTACCACCGCCTCCTCAATGCCTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGCGGCTGGAACAAGCGTGTGCCACGGCGGCGACGATGGGTGCCACGTCATGTATCGGTGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTTACGAAATATGAACAAGAACTTTCAAAACCCTTTCGAGATGCTATGCTGTTTCTTCACCGAATTGAGTGCCAATTCAAAGCTCTCTCTATTTCTTCCGATTCTGTTTGTGGTGAGGCATTTGATAGGAACGGATCATCGGAAGAGGAGGTCGATATCAACGGCCACTCCGTCGACCCCCAAGCCGAAGACCGCGAACTGAAAGGTCAGCTCCTCCGCAAATACAGCGGGTACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTCCCAAAGGAGGCCAGACAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTAGCATTGGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGAAAAAGACATTGGAAACCATCTGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACTCTGTCTTGGGCAATCCTTTTCCCTTTGATATTTCTCCCACTCTACTTTAA | 1014 | 43.59 | MDSGNGSSSSMMNFGDHHQNNNLMMMLPLMSACNNNNNNNNNNNPFPSQLPPNFNNNTSNSISNYFMDQNGNNNNHEGINANSTNSDVKAKIMAHPHYHRLLNAYVNCRKVGAPPEVVARLEQACATAATMGATSCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLHRIECQFKALSISSDSVCGEAFDRNGSSEEEVDINGHSVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDSVLGNPFPFDISPTLL | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 22133290 | 22138286 | + | Sed0016871.1 | Sed14g1325 | 737043 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g1325 | 337 | Pfam | KNOX1 domain | 88 | 126 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed14g1325 | 337 | Pfam | ELK domain | 219 | 240 | IPR005539 | GO:0003677(InterPro) | |
Sed14g1325 | 337 | SMART | KNOX1_2 | 86 | 130 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed14g1325 | 337 | SMART | HOX_1 | 241 | 306 | IPR001356 | GO:0003677(InterPro) | |
Sed14g1325 | 337 | SMART | ELK_2 | 219 | 240 | IPR005539 | GO:0003677(InterPro) | |
Sed14g1325 | 337 | Pfam | Homeobox KN domain | 259 | 298 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed14g1325 | 337 | SUPERFAMILY | Homeodomain-like | 241 | 315 | IPR009057 | - | |
Sed14g1325 | 337 | ProSiteProfiles | ELK domain profile. | 219 | 239 | IPR005539 | GO:0003677(InterPro) | |
Sed14g1325 | 337 | Pfam | KNOX2 domain | 136 | 182 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed14g1325 | 337 | ProSiteProfiles | 'Homeobox' domain profile. | 239 | 302 | IPR001356 | GO:0003677(InterPro) | |
Sed14g1325 | 337 | CDD | homeodomain | 251 | 303 | IPR001356 | GO:0003677(InterPro) | |
Sed14g1325 | 337 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 84 | 309 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed14g1325 | 337 | FunFam | Homeobox protein knotted-1-like 2 | 244 | 306 | - | - | |
Sed14g1325 | 337 | SMART | KNOX2_2 | 133 | 184 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed14g1325 | 337 | ProSitePatterns | 'Homeobox' domain signature. | 277 | 300 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed14g1325 | 337 | Gene3D | - | 244 | 306 | - | - | |
Sed14g1325 | 337 | MobiDBLite | consensus disorder prediction | 34 | 54 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0411 | Sed-Chr11:3964584 | Sed14g1325 | Sed-Chr14:22133290 | 8.40E-60 | dispersed | |
Sed13g1842 | Sed-Chr13:23357092 | Sed14g1325 | Sed-Chr14:22133290 | 2.30E-75 | dispersed | |
Sed13g1843 | Sed-Chr13:23357092 | Sed14g1325 | Sed-Chr14:22133290 | 1.80E-66 | dispersed | |
Sed13g1994 | Sed-Chr13:24792996 | Sed14g1325 | Sed-Chr14:22133290 | 1.10E-29 | dispersed | |
Sed14g0506 | Sed-Chr14:5016049 | Sed14g1325 | Sed-Chr14:22133290 | 4.10E-10 | dispersed | |
Sed10g0582 | Sed-Chr10:3858229 | Sed14g1325 | Sed-Chr14:22133290 | 1.10E-132 | wgd | |
Sed14g1325 | Sed-Chr14:22133290 | Sed05g2046 | Sed-Chr5:33703826 | 7.80E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40636 | PF03791 | KNOX2 | 3.90E-20 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g1325 | - | - | - | 0.0 |