Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1325 ATGGATAGTGGTAATGGAAGTTCTTCAAGTATGATGAATTTTGGAGATCATCATCAAAATAATAACTTGATGATGATGCTGCCTTTAATGTCAGCATGTAATAATAATAATAATAATAATAATAATAATAATCCATTCCCATCTCAGCTTCCTCCTAATTTCAACAACAACACTTCCAATTCTATTTCTAATTACTTCATGGACCAAAACGGCAATAACAACAACCACGAGGGCATCAATGCAAATTCTACCAATTCTGATGTCAAGGCCAAAATCATGGCTCATCCTCATTACCACCGCCTCCTCAATGCCTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGCGGCTGGAACAAGCGTGTGCCACGGCGGCGACGATGGGTGCCACGTCATGTATCGGTGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTTACGAAATATGAACAAGAACTTTCAAAACCCTTTCGAGATGCTATGCTGTTTCTTCACCGAATTGAGTGCCAATTCAAAGCTCTCTCTATTTCTTCCGATTCTGTTTGTGGTGAGGCATTTGATAGGAACGGATCATCGGAAGAGGAGGTCGATATCAACGGCCACTCCGTCGACCCCCAAGCCGAAGACCGCGAACTGAAAGGTCAGCTCCTCCGCAAATACAGCGGGTACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTCCCAAAGGAGGCCAGACAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTAGCATTGGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGAAAAAGACATTGGAAACCATCTGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACTCTGTCTTGGGCAATCCTTTTCCCTTTGATATTTCTCCCACTCTACTTTAA 1014 43.59 MDSGNGSSSSMMNFGDHHQNNNLMMMLPLMSACNNNNNNNNNNNPFPSQLPPNFNNNTSNSISNYFMDQNGNNNNHEGINANSTNSDVKAKIMAHPHYHRLLNAYVNCRKVGAPPEVVARLEQACATAATMGATSCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLHRIECQFKALSISSDSVCGEAFDRNGSSEEEVDINGHSVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDSVLGNPFPFDISPTLL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 22133290 22138286 + Sed0016871.1 Sed14g1325 737043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1325 337 Pfam KNOX1 domain 88 126 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed14g1325 337 Pfam ELK domain 219 240 IPR005539 GO:0003677(InterPro)
Sed14g1325 337 SMART KNOX1_2 86 130 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed14g1325 337 SMART HOX_1 241 306 IPR001356 GO:0003677(InterPro)
Sed14g1325 337 SMART ELK_2 219 240 IPR005539 GO:0003677(InterPro)
Sed14g1325 337 Pfam Homeobox KN domain 259 298 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed14g1325 337 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Sed14g1325 337 ProSiteProfiles ELK domain profile. 219 239 IPR005539 GO:0003677(InterPro)
Sed14g1325 337 Pfam KNOX2 domain 136 182 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed14g1325 337 ProSiteProfiles 'Homeobox' domain profile. 239 302 IPR001356 GO:0003677(InterPro)
Sed14g1325 337 CDD homeodomain 251 303 IPR001356 GO:0003677(InterPro)
Sed14g1325 337 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 309 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed14g1325 337 FunFam Homeobox protein knotted-1-like 2 244 306 - -
Sed14g1325 337 SMART KNOX2_2 133 184 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed14g1325 337 ProSitePatterns 'Homeobox' domain signature. 277 300 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed14g1325 337 Gene3D - 244 306 - -
Sed14g1325 337 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0411 Sed-Chr11:3964584 Sed14g1325 Sed-Chr14:22133290 8.40E-60 dispersed
Sed13g1842 Sed-Chr13:23357092 Sed14g1325 Sed-Chr14:22133290 2.30E-75 dispersed
Sed13g1843 Sed-Chr13:23357092 Sed14g1325 Sed-Chr14:22133290 1.80E-66 dispersed
Sed13g1994 Sed-Chr13:24792996 Sed14g1325 Sed-Chr14:22133290 1.10E-29 dispersed
Sed14g0506 Sed-Chr14:5016049 Sed14g1325 Sed-Chr14:22133290 4.10E-10 dispersed
Sed10g0582 Sed-Chr10:3858229 Sed14g1325 Sed-Chr14:22133290 1.10E-132 wgd
Sed14g1325 Sed-Chr14:22133290 Sed05g2046 Sed-Chr5:33703826 7.80E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40636 PF03791 KNOX2 3.90E-20 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1325 - - - 0.0