Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1360 ATGGCCACTAATCAGCCCCTTCTTCAACCCCCAAAATCTCCCCCCTCCAAAACCCTCCCAAAAATCCTCTGTTTTTCAGCAATCTTGTTCTGCTCTGCCATTTTCATCACCAACAAATTCATCAAACCAAACCCACCACTAAATGACCATCATTACCCCTTCCTTCACACCATCTGCCACAAAGCCTACAACCCATCATCCTGCATTCAAATGGCCACCTCTGAATTATTCCCCTTCAATCCACAAACAAACCCCAAATTTGCCCCTCATTTATTCCAATCACTTCTCAAAAACACCACAACCAAACTCATCAATACCATCCAAACCGCAACCAATCTCCGCCATCGAAGCAACGACCAACGCGGCAAGGCCGCGTTGGCCGATTGCATCGAGCTCATGGAGATCTCAATAGACCGAATCACAGACTCTGTTTCCGCTCTGAAAAACATAGCCACCGGCTCAATCGACAATGCACACACATGGCTGAGCAGCGTGCTGACGAATCACGTCACGTGCTCGGATGAGATCGATTCTTCAATCCCCGAATCCGCTGTGGAATTGGGGCTTGAAGAATTGATAGAAAGAGGGAGAAATTCACTTGGAATGTTGGTTTCGATTTGGGGAACGGAAATTGAGGAAATGGGAAAAAGGGGAAATGGGTATCCGAATTGGTTGAAGATCGGTGATCGGAGACTTTTGGAGGTTGTGGGGAGAGAAATTGAAGCGGATATTGTGGTGGCGAAGGATGGGAGTGGGAGGTTCTCGACGGTGGCGGAGGCGGTGGCGGCGGTGCCGGATAAAAGTAAAAAAAGAGTGATTATATATGTGAAAAAGGGGATTTATGAAGAGAATGTGGAAGTGGGGAAGAAGAAGAAGAATGTGATGATGATCGGCGATGGAATGGATTCTACGGTTATTACCGGTAGTCTCAATGTTGTTGATGGTTCCACAACTTTCAAATCTGCAACTGTTGCCGCTGTGGGAGATGGGTTTATAGCACAAGACATCTGGTTTAGAAACACAGCCGGGCCAGAAAAGCACCAAGCTGTGGCACTCCGGGTCGGAGCGGACCAATCCGTGATAAACCGTTGTCGAATCGACGCTTACCAAGACACTCTCTACACGCATTCCAACCGCCAATTCTACCGAGACTCGACCATCACGGGCACGGTCGACTTCATATTCGGTAATGCCGCGGTCGTGTTACAGAACTGCAAAATCGAACCCCGAAAACCGATGAGCAACCAGGCCAACATGGTCACGGCTCAAGGCCGAATCGACCCGAACCAAAACACTGGAACTTCAATCCACAGATGCCGAATTGTTGCGAGTTCAGACCTCGAGCCCGTTAAGAAGTCCATTAAGACGTATTTGGGCCGGCCTTGGAAGGAATTTTCGAGGACCGTAGTTATGCAGTCCACAATTGGGGATCTTGTAAGCCCATTGGGCTGGGCCGAGTGGAGTGGGGACTTTGCTTTGAAGACTCTTTATTACGGTGAGTATTCTAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTTAAATGGGCCGGTTTCCATGTCATTACGAGCCCAGAAGAAGCCCAAAAATTTACGGTTGACTCGCTTATACAAGGAGTTGAATGGCTGGGCCCCACAGGCGTGACTTTTGTTCCAGGGCTGTGA 1665 48.83 MATNQPLLQPPKSPPSKTLPKILCFSAILFCSAIFITNKFIKPNPPLNDHHYPFLHTICHKAYNPSSCIQMATSELFPFNPQTNPKFAPHLFQSLLKNTTTKLINTIQTATNLRHRSNDQRGKAALADCIELMEISIDRITDSVSALKNIATGSIDNAHTWLSSVLTNHVTCSDEIDSSIPESAVELGLEELIERGRNSLGMLVSIWGTEIEEMGKRGNGYPNWLKIGDRRLLEVVGREIEADIVVAKDGSGRFSTVAEAVAAVPDKSKKRVIIYVKKGIYEENVEVGKKKKNVMMIGDGMDSTVITGSLNVVDGSTTFKSATVAAVGDGFIAQDIWFRNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRKPMSNQANMVTAQGRIDPNQNTGTSIHRCRIVASSDLEPVKKSIKTYLGRPWKEFSRTVVMQSTIGDLVSPLGWAEWSGDFALKTLYYGEYSNNGPGSDVSKRVKWAGFHVITSPEEAQKFTVDSLIQGVEWLGPTGVTFVPGL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 22453067 22457114 - Sed0013341.1 Sed14g1360 737078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1360 554 Pfam Plant invertase/pectin methylesterase inhibitor 54 190 IPR006501 GO:0004857(InterPro)
Sed14g1360 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 206 IPR035513 -
Sed14g1360 554 PANTHER PECTINESTERASE 27 544 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed14g1360 554 NCBIfam pectinesterase inhibitor domain 26 177 IPR006501 GO:0004857(InterPro)
Sed14g1360 554 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Sed14g1360 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 202 IPR035513 -
Sed14g1360 554 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Sed14g1360 554 SMART PMEI_2 50 202 IPR006501 GO:0004857(InterPro)
Sed14g1360 554 CDD PMEI-like_4 58 206 - -
Sed14g1360 554 FunFam Pectinesterase 237 554 - -
Sed14g1360 554 Pfam Pectinesterase 243 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed14g1360 554 Gene3D - 237 554 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1726 Sed-Chr9:40469150 Sed14g1360 Sed-Chr14:22453067 2.70E-118 dispersed
Sed12g0271 Sed-Chr12:1549143 Sed14g1360 Sed-Chr14:22453067 2.90E-108 dispersed
Sed12g0805 Sed-Chr12:4944696 Sed14g1360 Sed-Chr14:22453067 8.20E-112 dispersed
Sed12g0806 Sed-Chr12:4957211 Sed14g1360 Sed-Chr14:22453067 2.30E-99 dispersed
Sed13g0067 Sed-Chr13:393264 Sed14g1360 Sed-Chr14:22453067 4.60E-115 dispersed
Sed13g1545 Sed-Chr13:20633207 Sed14g1360 Sed-Chr14:22453067 2.60E-102 dispersed
Sed14g1360 Sed-Chr14:22453067 Sed04g2368 Sed-Chr4:37098954 3.00E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1360 K01051 - csv:101216377 836.639