Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1428 ATGGGGTTTGCAAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGTTCTTGGTTTTCATCAACCCGTTTTGCTTTGGAGAAACGGACCTTCGTGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCACCTTTGAGAGGATGGATTCTTGTGGGAGGGGATCCATGTGGAGAGAAATGGCAAGGGGTTGAGTGTGTATTCACAAATATAACAGCTATACAACTTAGTGGTTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCCATAGATCTTAGCAACAATCACATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTAAGAAGTTTCTCATTATCAGCTAATCAATTAACTGGAAGCATTCCCTCTGCTTTGGCCACACTAACACAATTGATGGTCTTGTCATTAAACAATAACCTTCTTACTGGGGTAATACCAGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCTGGCAACAACTTGAGCGGCCAGTTGCCTCCCTCGGTGGCCGATTTGCTCTCCCTTGCTACATTGCACTTGCAGAACAATCATCTTTCTGGGATGCTTGATGCTCTACAAGATCTTCCATTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGGCCTATACCTGCTAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTTCGATTATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCGCCAGTTACTATTGGAAAACCAACCAGACAGACAGGTGCGGGCCAGCCATTGTCGTCGGGGACTCCTGAAATGGAGGGAGGAAAGAGTTTCTTTTCTGCTAAGCACATCATTTGGATTGTTATTATTGGCGCAATAATATTAGTTGCATTAGGATTATGCATTCTTGTGTCGTTATGCTCGAAAAGAAGAAAGCATCGTAAAGATACCAATATGGTTCGTCACAATGCTGATATGGCTTCTGAATCTAAGCCTAAGCCCATGAGGCCCTCGGTTGACGTTGATGACGTGGAGAAAGGTCCAAGGGAGGTCACTCTTAAGCCACTTGATAGAGACAGAATGATGGATAGAAAAATGGATTTTACCACCCCAAGGCCTGTAGATAGACAGGACACAAATGGGAATAGAAATGATGCCTATACTACGAGTTTTCGTAAAGACCATGCGGAGAGTTCAAGCATAAGCATGGATGGCGAAGAATTCCTTGCACCGCCTCCTCCGCCTCCTTTTTTCCTCTCTTCAACTCAGGAGATTGCAAAACCAATTGTGGCAGCTGAAGGACCCAGTAGAGTACCTAAAAACCTGAACACAAGTTCTTTAAAAGTTTTCACAATCGCCTCACTTCAGCAGTATACTAATAGTTTTTCTCAAGATAATCTTCTTGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAGCATTCAAGTGGAAGGCTTTTGGCTGTTAAAAAGCTGGATAGACCCTCTTCAACCCGTTGGAGCGACGATGAATTTCACAACCTTGTGTCTAATATATGCGAAATTCGACACGATAACATCGTGGAGCTTGTGGGCTATTGTGTTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACTCTCTATGATGCACTCCATGTTGACTATGAGATGAATCGGAAGCTTTCATGGAATGTACGCGTGAGGATTGCACTTGGAGTTGCACGAGCCCTCGAGTATCTTCATGAGGCCTGTCAACCACCTATTATGCACCAGAATTTTAAGTCTGCTAACATTCTATTGGACAATGCGCTAAAAGCGCAGGTCTCCGACTCTGGCTTAGGTTTTCTGCTTTCTTCAGCTAGTCAGTCATCTGCAAATTTCCTCCCAGCTCTTGGTTATAGTGCTCCTGAACTCGAGTCGGGAACTTACACCTACCAAAGTGATATCTTTAGCTTTGGAGTCATAATGCTAGAGCTTCTCACTGGTCGGAAAGCGTGTGACCGATCACTACCTAGAGGAGAGCAATTTCTTGTTCGTTGGGCGGTTCCAAGGCTCCATGATATCGATGCGTTATCAAGAATGGTCGATCCATCGCTTAATGGGACGTATCCCATTAAGTCATTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGAGAGAGCCCGAATTTCGGCCCCCGATCTCGGAAATAGTACAGAAACTCTTACAAATGCTGTAG 2265 43.66 MGFANWNLFMKILIGLFLVFINPFCFGETDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFTNITAIQLSGLNLGGELGTSLDQFESIISIDLSNNHIGGNIPSTLPATLRSFSLSANQLTGSIPSALATLTQLMVLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSVADLLSLATLHLQNNHLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTSIIPSAPALAPSPFAVAPVTIGKPTRQTGAGQPLSSGTPEMEGGKSFFSAKHIIWIVIIGAIILVALGLCILVSLCSKRRKHRKDTNMVRHNADMASESKPKPMRPSVDVDDVEKGPREVTLKPLDRDRMMDRKMDFTTPRPVDRQDTNGNRNDAYTTSFRKDHAESSSISMDGEEFLAPPPPPPFFLSSTQEIAKPIVAAEGPSRVPKNLNTSSLKVFTIASLQQYTNSFSQDNLLGRGMLGSVYRAEHSSGRLLAVKKLDRPSSTRWSDDEFHNLVSNICEIRHDNIVELVGYCVEHGQYLLIYEYCKNGTLYDALHVDYEMNRKLSWNVRVRIALGVARALEYLHEACQPPIMHQNFKSANILLDNALKAQVSDSGLGFLLSSASQSSANFLPALGYSAPELESGTYTYQSDIFSFGVIMLELLTGRKACDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGTYPIKSLSRFADIISSCIMREPEFRPPISEIVQKLLQML 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 22856936 22862060 - Sed0020747.2 Sed14g1428 737146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1428 754 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 556 754 - -
Sed14g1428 754 MobiDBLite consensus disorder prediction 389 403 - -
Sed14g1428 754 Gene3D Ribonuclease Inhibitor 39 254 IPR032675 -
Sed14g1428 754 MobiDBLite consensus disorder prediction 384 403 - -
Sed14g1428 754 Pfam Protein kinase domain 479 749 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1428 754 Gene3D Transferase(Phosphotransferase) domain 1 556 754 - -
Sed14g1428 754 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Sed14g1428 754 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 447 555 - -
Sed14g1428 754 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Sed14g1428 754 SUPERFAMILY Protein kinase-like (PK-like) 456 750 IPR011009 -
Sed14g1428 754 SUPERFAMILY L domain-like 33 237 - -
Sed14g1428 754 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Sed14g1428 754 PANTHER LEUCINE RICH REPEAT KINASE 2 71 752 IPR051420 -
Sed14g1428 754 Gene3D Phosphorylase Kinase; domain 1 446 555 - -
Sed14g1428 754 MobiDBLite consensus disorder prediction 340 363 - -
Sed14g1428 754 ProSiteProfiles Protein kinase domain profile. 478 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1428 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1967 Sed-Chr5:32996184 Sed14g1428 Sed-Chr14:22856936 9.80E-148 dispersed
Sed14g1428 Sed-Chr14:22856936 Sed09g0440 Sed-Chr9:4368837 3.50E-57 dispersed
Sed14g1427 Sed-Chr14:22856936 Sed14g1428 Sed-Chr14:22856936 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1288 Blo03g01024 . . . . . Bma14g00376 . . . . . . . . . . . . . . . . . Cla02g02181 Cam02g2325 Cec02g2363 Cco02g2405 Clacu02g2300 Cmu02g2233 Cre02g2556 . . Cone18ag0160 . . Csa06g02476 Chy05g00198 . . . Bda07g00707 . . Bpe11g00885 . . Sed14g1428 Cmo02g01341 Cmo20g00158 Cma02g01300 Cma20g00142 Car02g01089 Car20g00122 Cpe16g00828 . Bhi10g00196 Tan05g0233 Cmetu11g0091 . Hepe08g0900 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g3333 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3334 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3335 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed05g1967 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed05g1968 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed14g1427 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed14g1428 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed01g1999 . 276 604 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2000 . 253 581 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2001 . 225 553 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed04g2358 . 382 689 Strubbelig Receptor Gene Family AT4G03390 55.0 5.5e-90 330.1
Sed02g0342 . 17 734 Strubbelig Receptor Gene Family AT5G06820 51.7 6.8e-175 612.1
Sed03g1214 . 23 693 Strubbelig Receptor Gene Family AT1G78980 63.2 6.9e-193 671.8
Sed11g1725 . 10 665 Strubbelig Receptor Gene Family AT1G78980 57.6 4.1e-177 619.4
Sed06g2277 . 31 714 Strubbelig Receptor Gene Family AT1G78980 51.3 1.4e-148 524.6
Sed06g2278 . 67 744 Strubbelig Receptor Gene Family AT1G78980 51.5 2.0e-147 520.8
Sed06g2279 . 1 673 Strubbelig Receptor Gene Family AT1G78980 51.2 2.4e-145 513.8
Sed04g2358 . 29 692 Strubbelig Receptor Gene Family AT1G78980 52.1 4.3e-126 449.9
Sed01g1999 . 289 612 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2000 . 266 589 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2001 . 238 561 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed03g1214 . 2 671 Strubbelig Receptor Gene Family AT3G13065 53.8 6.4e-143 505.8
Sed11g1725 . 5 655 Strubbelig Receptor Gene Family AT3G13065 50.6 4.0e-137 486.5
Sed01g1999 . 299 590 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2000 . 276 567 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2001 . 248 539 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed04g3333 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3334 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3335 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed01g1998 . 391 684 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g1999 . 297 590 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g2000 . 274 567 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed01g2001 . 246 539 Strubbelig Receptor Gene Family AT1G11130 53.1 8.0e-85 312.8
Sed08g1942 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 1.2e-83 308.9
Sed02g0342 . 17 734 Strubbelig Receptor Gene Family AT5G06820 51.7 6.8e-175 612.1
Sed04g3333 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3334 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed04g3335 . 26 781 Strubbelig Receptor Gene Family AT4G03390 62.1 4.6e-206 715.7
Sed05g1967 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed05g1968 . 34 779 Strubbelig Receptor Gene Family AT4G03390 61.5 2.2e-195 680.2
Sed14g1427 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed14g1428 . 18 754 Strubbelig Receptor Gene Family AT4G03390 52.5 8.3e-155 545.4
Sed01g1999 . 276 604 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2000 . 253 581 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed01g2001 . 225 553 Strubbelig Receptor Gene Family AT4G03390 58.9 1.6e-102 371.7
Sed04g2358 . 382 689 Strubbelig Receptor Gene Family AT4G03390 55.0 5.5e-90 330.1
Sed03g1214 . 2 671 Strubbelig Receptor Gene Family AT3G13065 53.8 6.4e-143 505.8
Sed11g1725 . 5 655 Strubbelig Receptor Gene Family AT3G13065 50.6 4.0e-137 486.5
Sed01g1999 . 299 590 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2000 . 276 567 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed01g2001 . 248 539 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-87 321.2
Sed04g3333 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3334 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed04g3335 . 479 771 Strubbelig Receptor Gene Family AT3G13065 50.3 1.3e-79 295.4
Sed03g1214 . 23 693 Strubbelig Receptor Gene Family AT1G78980 63.2 6.9e-193 671.8
Sed11g1725 . 10 665 Strubbelig Receptor Gene Family AT1G78980 57.6 4.1e-177 619.4
Sed06g2277 . 31 714 Strubbelig Receptor Gene Family AT1G78980 51.3 1.4e-148 524.6
Sed06g2278 . 67 744 Strubbelig Receptor Gene Family AT1G78980 51.5 2.0e-147 520.8
Sed06g2279 . 1 673 Strubbelig Receptor Gene Family AT1G78980 51.2 2.4e-145 513.8
Sed04g2358 . 29 692 Strubbelig Receptor Gene Family AT1G78980 52.1 4.3e-126 449.9
Sed01g1999 . 289 612 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2000 . 266 589 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed01g2001 . 238 561 Strubbelig Receptor Gene Family AT1G78980 55.6 2.4e-97 354.4
Sed06g2277 . 1 707 Strubbelig Receptor Gene Family AT1G53730 61.3 1.8e-212 736.9
Sed06g2278 . 67 737 Strubbelig Receptor Gene Family AT1G53730 63.0 3.9e-207 719.2
Sed06g2279 . 1 666 Strubbelig Receptor Gene Family AT1G53730 62.8 4.7e-205 712.2
Sed04g2358 . 4 714 Strubbelig Receptor Gene Family AT1G53730 60.7 2.2e-186 650.2
Sed03g1214 . 2 679 Strubbelig Receptor Gene Family AT1G53730 52.3 2.9e-154 543.5
Sed01g2000 . 268 590 Strubbelig Receptor Gene Family AT1G53730 64.6 6.6e-114 409.5
Sed01g2001 . 240 562 Strubbelig Receptor Gene Family AT1G53730 64.6 6.6e-114 409.5
Sed06g2277 . 19 711 Strubbelig Receptor Gene Family AT3G14350 52.5 6.4e-183 638.6
Sed06g2278 . 67 741 Strubbelig Receptor Gene Family AT3G14350 52.4 1.4e-177 620.9
Sed06g2279 . 1 670 Strubbelig Receptor Gene Family AT3G14350 52.2 1.7e-175 614.0
Sed04g2358 . 11 704 Strubbelig Receptor Gene Family AT3G14350 53.9 1.2e-165 581.3
Sed01g2001 . 1 569 Strubbelig Receptor Gene Family AT4G22130 64.3 8.3e-181 631.3
Sed01g2000 . 21 597 Strubbelig Receptor Gene Family AT4G22130 62.2 5.8e-174 608.6
Sed01g1998 . 339 714 Strubbelig Receptor Gene Family AT4G22130 80.6 1.9e-172 603.6
Sed01g1999 . 245 620 Strubbelig Receptor Gene Family AT4G22130 80.6 1.9e-172 603.6
Sed08g1942 . 341 708 Strubbelig Receptor Gene Family AT4G22130 81.5 9.2e-172 601.3
Sed06g2277 . 401 722 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed06g2278 . 431 752 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed06g2279 . 360 681 Strubbelig Receptor Gene Family AT4G22130 64.2 1.8e-119 427.6
Sed04g2358 . 393 706 Strubbelig Receptor Gene Family AT4G22130 63.9 6.1e-115 412.5
Sed04g3333 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed04g3334 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed04g3335 . 477 773 Strubbelig Receptor Gene Family AT4G22130 62.1 7.9e-107 385.6
Sed05g1967 . 476 771 Strubbelig Receptor Gene Family AT4G22130 60.6 9.7e-105 378.6
Sed05g1968 . 476 771 Strubbelig Receptor Gene Family AT4G22130 60.6 9.7e-105 378.6
Sed03g1214 . 376 693 Strubbelig Receptor Gene Family AT4G22130 56.3 7.7e-102 369.0
Sed11g1725 . 324 667 Strubbelig Receptor Gene Family AT4G22130 52.3 3.1e-95 347.1
Sed14g1427 . 453 754 Strubbelig Receptor Gene Family AT4G22130 56.5 5.3e-95 346.3
Sed14g1428 . 453 754 Strubbelig Receptor Gene Family AT4G22130 56.5 5.3e-95 346.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80205 PF07714 PK_Tyr_Ser-Thr 3.50E-37 CL0016 Sed PK