Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1493 ATGGGTGCTTTGATTGATCTTAATACCACTGAAGAAGATGATGGTTCCTCTGTTTCTTCTTCCTCTGCTTCTGTTTTAACTTCCTCTCCTTCTCCTTGTGTTGGTTCTTCTTCGATTTGCTTGGAGCTATGGCATGCTTGTGCTGGCCCTGTTGCGTCCTTGCCCAAGAAAGGGAGCTTGGTTGTGTATTTCCCGCAGGGTCATTTGGAGGTGATGAAGGAATTTACTGCCACTGCGGTTCATGATCTTCCTCCACATATCCTTTGTCGTGTCATTGATGTTCAGCTTCATGCTGAGGCTGGGAGTGACGAGGTTTATGCTCAGGTCTCATTGCTTCCTGAAAATGAGCAAATGGAGTTCAAGATGCATGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGGTGGTGAAAAGACCACTACACCCCACATGTTTTGCAAGACCCTTACTGCTTCAGACACTAGTACTCATGGAGGCTTCTCCGTCCCGAGACGAGCAGCTGAGGATTGCTTCCCGCCATTGGATTATAAAATACAGAGGCCTTCTCAAGAGCTTGTTGCAAAGGATCTCCTTGGGATAAAATGGAAATTCAGGCACATATATCGCGGGCAGCCTAGAAGACATTTGCTAACCACTGGCTGGAGTGCATTCGTTAACAAGAAAAGGCTTGTTTCGGGTGATGCAGTGCTTTTTCTTAGGGGTCAAGATGGGGAATTAAGACTAGGGATTCGAAGAGCTGTGCAGCTTAAAAGTGGTTCTGGATTTTCTAATATTTGCAGTCAGCAGCTCAATTCTAGTAGAGTCATGGATGTGGTTAATGCTATATCTACAAAAAGTTCATTTAGCGTATGCTACAATCCCAGGGCTACATCTTCTCAGTTTGTCTTGCCTTTTCACAAGTTCTTGAAAAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTCAAGCTGAGTTTTGAGACTGAAGATGCGGCTGATCGAAGATACACTGGACATATAACTGGAGTTGGTGATGTGGATCCTATCAGATGGAGAGGATCAAGGTGGAGGTCCCTTGTGGTAAGGTGGGATGATGGCGAAACTAACAGGCATGGCCGGGTTTCCCCATGGGAGATTGAGCCCTCTGGTTCTGTTTCTATGTCTAGCAACTTGGTTGCCTCTGGTTTGAAAAGGACTAGGATTGGGTTCTCTCCCACAAAATTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGATGGCGACGACATCGTCCGTCATCCACCCGAGAAGAGGAGATTGTTTCCTGGTTCACAGGGTTCTGGGATTGCTCTTATGAGAAATGGCCCAAGAAACCCATTTATCAACCCTGAAACTTCCTCCCGGGGTCTCATGTTTGATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCGTTTTACGGTAGGGCCATTGCCACCAATGAAGTCAAGGCAAACAGCGGTTGCGGTCCTGTTGATGGTGCTTGGTTCTCTAGGTCTAAAGATGGATGGCCCCTGGCAATGCAATGCGAAAATTTCCTCACACGTTCTTCCATTCCTTCTGTCCAAGTCTCATCACCATCATCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGCTCAAAGCTTCAATTCACATAACCGTGGCAATTTCGTAGAACAGATTATTGTGAACAATAGTACATCCCATAATTCTGGGACAGCATTCATGACTGACCATAGCTCGAATACTGAAGTCCTGCTAGGCATACACCCCACTTCATTGGGCAAGCAGAATCAGCTCGGCCTATCACATCCGTCTACAACAGCACCGGCGTTTACAGGAAGTAAAGATCTTTCTTCAACTTGCAAAGCTGGCTGTAGGTTGTTTGGATTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGATAAGGCTTCTCCAGCGACAACTCCAATTAATGCAGGAACAACCACTGTCTTGTCTAATATTGGAGCTCAATGTCCTTTGAAGTCTCCACTTATGAGCAAGGTGGTTGGAAGCAACTACACTAAAGTAAGTAATTTACCTGCTCGTGCCGTAGAGGCGATATATTTTACGTAA 2178 45.0 MGALIDLNTTEEDDGSSVSSSSASVLTSSPSPCVGSSSICLELWHACAGPVASLPKKGSLVVYFPQGHLEVMKEFTATAVHDLPPHILCRVIDVQLHAEAGSDEVYAQVSLLPENEQMEFKMHEEMNNDSEEEDVEGGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKIQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGQDGELRLGIRRAVQLKSGSGFSNICSQQLNSSRVMDVVNAISTKSSFSVCYNPRATSSQFVLPFHKFLKSINHSFSVGMRFKLSFETEDAADRRYTGHITGVGDVDPIRWRGSRWRSLVVRWDDGETNRHGRVSPWEIEPSGSVSMSSNLVASGLKRTRIGFSPTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGDDIVRHPPEKRRLFPGSQGSGIALMRNGPRNPFINPETSSRGLMFDESFQFHKVLQGQEIFPSPFYGRAIATNEVKANSGCGPVDGAWFSRSKDGWPLAMQCENFLTRSSIPSVQVSSPSSVFMFQQSMVPAQSFNSHNRGNFVEQIIVNNSTSHNSGTAFMTDHSSNTEVLLGIHPTSLGKQNQLGLSHPSTTAPAFTGSKDLSSTCKAGCRLFGFSLTEEKNVGNTDKASPATTPINAGTTTVLSNIGAQCPLKSPLMSKVVGSNYTKVSNLPARAVEAIYFT 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23266471 23271328 - Sed0006214.2 Sed14g1493 737211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1493 725 MobiDBLite consensus disorder prediction 1 31 - -
Sed14g1493 725 SUPERFAMILY DNA-binding pseudobarrel domain 142 258 IPR015300 -
Sed14g1493 725 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677(InterPro)
Sed14g1493 725 MobiDBLite consensus disorder prediction 10 31 - -
Sed14g1493 725 Pfam Auxin response factor 273 354 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed14g1493 725 FunFam Auxin response factor 145 249 - -
Sed14g1493 725 SMART B3_2 147 249 IPR003340 GO:0003677(InterPro)
Sed14g1493 725 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677(InterPro)
Sed14g1493 725 CDD B3_DNA 145 247 IPR003340 GO:0003677(InterPro)
Sed14g1493 725 FunFam Auxin response factor 310 381 - -
Sed14g1493 725 Gene3D - 310 384 - -
Sed14g1493 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 38 712 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed14g1493 725 Gene3D - 145 249 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0278 Sed-Chr10:1625074 Sed14g1493 Sed-Chr14:23266471 0.00E+00 dispersed
Sed10g0279 Sed-Chr10:1625074 Sed14g1493 Sed-Chr14:23266471 0.00E+00 dispersed
Sed14g1493 Sed-Chr14:23266471 Sed14g1598 Sed-Chr14:24132416 4.60E-91 dispersed
Sed14g1492 Sed-Chr14:23266471 Sed14g1493 Sed-Chr14:23266471 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40657 PF02362 B3 2.80E-21 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1493 K14486 - csv:101220018 1193.72