Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1515 ATGGCGGACGACAAGGAAATGTCAGCCCCTGTCATTGATGGAAATGATCCAGTCACTGGTCACATAATATCCACCACTATAGGAGGCAAGAATGGGGAGCCCAAACAGACCATAAGTTACATGGCAGAACGTGTTGTTGGGACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACCGGTGAAAATGTGGCGATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAACCGTGAGCTCCAGTTAATGCGCGTGATGGATCATTCAAATGTTATTTCCTTAAAGCATTGTTTCTTCTCCACTACTACAAAAGATGAACTTTTTCTCAACTTGGTTATGGAATATGTCCCTGAAACTATGTTTCGAGTTTTGAAGCATTACAGCAATGCAAATCAAAGAATGCCAATCATCTATGTTAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACTGTTCCTGGAGTTTGCCACCGTGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACTCACCAAGTTAAAATATGCGATTTTGGAAGCGCGAAAATGCTTATGAAAGGTGAAGCCAATGTTTCCTATATATGTTCACGTTACTATCGGGCACCCGAACTCATCTTTGGAGCTACAGAGTATACAACCTCAATAGATATTTGGTCAGCTGGTTGTGTCCTTGCAGAGCTACTTTTGGGACAGCCTTTGTTTCCTGGAGAAAATGCAGTGGACCAACTTGTAGAGATTATTAAGGTTCTTGGCACCCCAACTCGTGAAGAGATTCGATGCATGAATCCAAGTTATACAGACTATAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGGTTTTCCACAAAAGGATGCCTCCGGAAGCAATAGATCTGGCGTCACGCTTGCTTCAGTATTCACCTAGTCTCCGCTGCACTGCGCTGGAAGCTTGTGCACATTCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTCCCCAATGGTCGACCATTCCCACCCCTCTTTAACTTCAAACAAGAGCTGTCGGGGGCGTCTCCTGAGCTCGTTAACAAGTTGATACCCGATCAAGTGAAACGTCAAATGGGTCTTAATTTGCATCTAGCAATGTCGTAA 1140 43.51 MADDKEMSAPVIDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHSNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHSFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDQVKRQMGLNLHLAMS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23465468 23469813 + Sed0020791.1 Sed14g1515 737233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1515 379 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Sed14g1515 379 SUPERFAMILY Protein kinase-like (PK-like) 39 348 IPR011009 -
Sed14g1515 379 CDD STKc_GSK3 35 327 IPR039192 -
Sed14g1515 379 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Sed14g1515 379 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1515 379 SMART serkin_6 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1515 379 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Sed14g1515 379 FunFam Shaggy-related protein kinase kappa 120 367 - -
Sed14g1515 379 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1515 379 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 10 368 IPR050591 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed14g1515 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g1515 379 FunFam Glycogen synthase kinase-3 beta 24 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1515 K14502 - - csv:101213806 759.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3182 Sed-Chr5:41677491 Sed14g1515 Sed-Chr14:23465468 1.80E-196 dispersed
Sed14g0645 Sed-Chr14:6522922 Sed14g1515 Sed-Chr14:23465468 5.70E-166 dispersed
Sed14g1515 Sed-Chr14:23465468 Sed04g0107 Sed-Chr4:649301 2.40E-46 dispersed
Sed14g1515 Sed-Chr14:23465468 Sed14g1516 Sed-Chr14:23465468 2.90E-169 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g668 . . . . . . . . . Cmo12g00528 . . . Car12g00534 Sed14g1515 . Cpe07g00511 Bhi04g00405 Tan02g1754 Cmetu11g0428 . Hepe08g1323 . Lcy13g2126 Cla08g01612 Cam08g2113 Cec08g1699 Cco08g1822 Clacu08g1798 . Cre08g1581 . . . . . . . Cme03g02093 . . . . . . . . . . . Cma12g00590 . . . . . . . . . . . . . . . . . . . Lsi08g01516 Csa02g01904 Chy03g01582 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80209 PF00069 Pkinase 2.60E-65 CL0016 Sed PK