Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1516 ATGGCGGACGACAAGGAAATGTCAGCCCCTGTCATTGATGGAAATGATCCAGTCACTGGTCACATAATATCCACCACTATAGGAGGCAAGAATGGGGAGCCCAAACAGACCATAAGTTACATGGCAGAACGTGTTGTTGGGACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACCGGTGAAAATGTGGCGATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAACCGTGAGCTCCAGTTAATGCGCGTGATGGATCATTCAAATGTTATTTCCTTAAAGCATTGTTTCTTCTCCACTACTACAAAAGATGAACTTTTTCTCAACTTGGTTATGGAATATGTCCCTGAAACTATGTTTCGAGTTTTGAAGCATTACAGCAATGCAAATCAAAGAATGCCAATCATCTATGTTAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACTGTTCCTGGAGTTTGCCACCGTGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACTCACCAAGTTAAAATATGCGATTTTGGAAGCGCGAAAATGCTTATGAAAGGTGAAGCCAATGTTTCCTATATATGTTCACGTTACTATCGGGCACCCGAACTCATCTTTGGAGCTACAGAGTATACAACCTCAATAGATATTTGGTCAGCTGGTTGTGTCCTTGCAGAGCTACTTTTGGGACAGCCTTTGTTTCCTGGAGAAAATGCAGTGGACCAACTTGTAGAGATTATTAAGGTTCTTGGCACCCCAACTCGTGAAGAGATTCGATGCATGAATCCAAGTTATACAGACTATAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGGTATGA 867 41.75 MADDKEMSAPVIDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHSNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKV 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23465468 23469813 + Sed0020791.2 Sed14g1516 737234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1516 288 FunFam Shaggy-related protein kinase kappa 120 288 - -
Sed14g1516 288 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 10 288 IPR050591 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed14g1516 288 ProSiteProfiles Protein kinase domain profile. 40 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1516 288 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Sed14g1516 288 SUPERFAMILY Protein kinase-like (PK-like) 39 284 IPR011009 -
Sed14g1516 288 FunFam Glycogen synthase kinase-3 beta 24 119 - -
Sed14g1516 288 CDD STKc_GSK3 35 288 IPR039192 -
Sed14g1516 288 Gene3D Transferase(Phosphotransferase) domain 1 120 288 - -
Sed14g1516 288 Pfam Protein kinase domain 40 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1516 288 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Sed14g1516 288 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g1516 288 SMART serkin_6 40 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1516 K14502 - - csv:101213806 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1516 Sed-Chr14:23465468 Sed03g2599 Sed-Chr3:41777046 4.30E-40 dispersed
Sed14g1515 Sed-Chr14:23465468 Sed14g1516 Sed-Chr14:23465468 2.90E-169 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80210 PF00069 Pkinase 1.70E-58 CL0016 Sed PK