Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1517 ATGGAAGTGGTAAAGCTAAAGGTGGGGTTTTTTCTGTTCATCCTCATCTGGGTGGCATCTGGTTTGGACAGTCATTTGTCTCCAAAAGGAGTGAACTATGAAGTGGCGGCTTTGATGTCGATGAAGAGTAGGATGGGGGATGAACGGGGAGTGATGGAAGGATGGGATATTAATTCTGTTGATCCATGTACTTGGAATATGGTTGCTTGCTCTACTGAGAGCTTTGTGATTTCTCTTGAGATGCCGAATATGGGCTTATCTGGAACTCTGTCCCCTAGCATTGGAAACCTCAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTACAATCCCAGATGATATAGGAGGACTTTCAGAGCTTCAGACTCTTGACCTTTCTAGCAATCAGTTTGTTGGAGGCATTCCAAGTTCTTTGGGGTTTCTTACTCATTTAAATTACTTGAAGCTTAGTGGTAACAAGTTAAGTGGACCAATACCGGAATCGGTTGCAAATATCTCAGGCCTTACCTTTTTGGATTTATCAAATAATAATCTAAGTGGTTCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGATTCCTTTGCGCATCTTCATCATCTACAGTTTGTGGAATAGTTTCAAAACCAGTTAACGAAACTGGTCCGCCTCAGAAAGATAATGGCCATCATCACTTGGTTCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTTTGTTGTGTTACTTGTTGGCTGGGTACATTGTTATAGATCTCAACTCGTCTTCACATCCTACGTGCAGCAAGATTATGAGTTTGATATTGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACGTGTAACTTTAGTCCCCAAAACATCCTTGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGGTATCTTCCAAATGGAACATATGTTGCTGTCAAGAGACTGAAGGATCCAAATTGTACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCGGTACACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACACCAGATGAGAGGTTGCTTGTTTATCCATACATGCCAAATGGGAGTGTCGCCGACCGCTTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGGAGATTGCATATAGCCCTCGGTGCAGCACGCGGACTTCTATACTTGCACGAGCAGTGTAACCCGAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCTGTGGTTGGAGATTTCGGTCTGGCAAAGATGTTAGATAGGAGGGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCACCAGAATATCTTTCGACTGGACAATCTTCAGAAAAGACTGATGTCTTTGGATTTGGCATATTGGTTCTGGAACTCCTAACAGGGCAAAAAGCACTAGATGCTGGCAATGGTCATGTCCGAAAGGGAATGATTCTCGAATGGGTTAGAACAATACACGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAGGCTGTAGAATTGGCTCTGCAATGTACTCGGTCACATCCTCAACTTAGACCAAAGATGTCTGAGATTTTGAAGGTTTTAGAAGGTCTTGTTGGGCAGTCGAGCCAAACGGAGGACTCTCCGAGTGGAGCAAGTCTATATGAGGATAGAGCTCACAGTTTCTCCAGAAACTACAGTGATATTCATGAAGAATCTTCATTTGTTGTCGAAGACATGGAGCTTTCGGGACCTCGGTGA 1857 42.86 MEVVKLKVGFFLFILIWVASGLDSHLSPKGVNYEVAALMSMKSRMGDERGVMEGWDINSVDPCTWNMVACSTESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGTIPDDIGGLSELQTLDLSSNQFVGGIPSSLGFLTHLNYLKLSGNKLSGPIPESVANISGLTFLDLSNNNLSGSTPRILAKEYSVAGNRFLCASSSSTVCGIVSKPVNETGPPQKDNGHHHLVLSIALIVSFTFVVFVVLLVGWVHCYRSQLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNCTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGHVRKGMILEWVRTIHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTRSHPQLRPKMSEILKVLEGLVGQSSQTEDSPSGASLYEDRAHSFSRNYSDIHEESSFVVEDMELSGPR 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23471039 23475803 + Sed0020622.1 Sed14g1517 737235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1517 618 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515(InterPro)
Sed14g1517 618 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
Sed14g1517 618 Pfam Leucine Rich Repeat 172 191 IPR001611 GO:0005515(InterPro)
Sed14g1517 618 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Sed14g1517 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g1517 618 Gene3D Transferase(Phosphotransferase) domain 1 371 579 - -
Sed14g1517 618 FunFam Somatic embryogenesis receptor kinase 1 264 370 - -
Sed14g1517 618 Gene3D Phosphorylase Kinase; domain 1 265 370 - -
Sed14g1517 618 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524(InterPro)
Sed14g1517 618 FunFam Somatic embryogenesis receptor-like kinase 1 371 582 - -
Sed14g1517 618 ProSiteProfiles Protein kinase domain profile. 295 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1517 618 SMART serkin_6 295 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1517 618 Pfam Protein kinase domain 298 565 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1517 618 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Sed14g1517 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 618 - -
Sed14g1517 618 SUPERFAMILY L domain-like 33 194 - -
Sed14g1517 618 SUPERFAMILY Protein kinase-like (PK-like) 277 568 IPR011009 -
Sed14g1517 618 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Sed14g1517 618 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2261 Sed-Chr12:32917183 Sed14g1517 Sed-Chr14:23471039 1.80E-111 dispersed
Sed13g0980 Sed-Chr13:7562481 Sed14g1517 Sed-Chr14:23471039 1.10E-114 dispersed
Sed14g1517 Sed-Chr14:23471039 Sed14g1519 Sed-Chr14:23471039 8.00E-286 dispersed
Sed14g1517 Sed-Chr14:23471039 Sed14g1518 Sed-Chr14:23471039 2.20E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80211 PF00069 Pkinase 2.50E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1517 - - - 0.0